PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 862733
Common NameARALYDRAFT_662177
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 328aa    MW: 36953.9 Da    PI: 10.194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
862733genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-091256345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W +++d  + +a + +  +   +Wk+Ia  ++ g+tl+q++++++
           862733 12 SWNKDDDIAFERALAIYNDKteiRWKKIATVVP-GKTLEQVIEHYN 56
                     7*****************99*************.***********7 PP
2Myb_DNA-binding36.51.1e-11120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT  E+ +++ + k++G+g+W++I+r+   +Rt  q+ s+ qky
           862733 120 PWTSIEHRQFLLGLKKYGKGDWRSISRHCVVTRTSTQVASHAQKY 164
                      7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-4758IPR009057Homeodomain-like
PROSITE profilePS512939.094863IPR017884SANT domain
SMARTSM007172.4E-8961IPR001005SANT/Myb domain
CDDcd001671.46E-81256No hitNo description
SuperFamilySSF466899.72E-111263IPR009057Homeodomain-like
PfamPF002495.5E-71256IPR001005SANT/Myb domain
PROSITE profilePS5129413.406112169IPR017930Myb domain
SuperFamilySSF466897.18E-15114169IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-15117167IPR006447Myb domain, plants
SMARTSM007171.3E-6117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-9118164IPR009057Homeodomain-like
CDDcd001676.40E-9120165No hitNo description
PfamPF002496.1E-9120164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MALAQKTSVG SSWNKDDDIA FERALAIYND KTEIRWKKIA TVVPGKTLEQ VIEHYNILAR  60
DVMLIESGCI PLPDYEFSEE PNQDASDKER SILEGGNNRK CEFKHKGKSK LKQKRRKGIP  120
WTSIEHRQFL LGLKKYGKGD WRSISRHCVV TRTSTQVASH AQKYFAHINS KDKKKKRPSI  180
HDITVVEKQK PITWQNRNIN GATTSNTQAN QTTLQQSLNL PIYDRPNIWN TQATQAISQP  240
SRNHPTYGAS TTWNTQAALQ PSANIPMYGT STISQPMVGP MLSTFGTNLN RMAPPHMTSG  300
VQHKPYYSGP SAPINMDSIP YNIDLYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-13375173RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap862733
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566850.0DQ056685.1 Arabidopsis thaliana myb family transcription factor (At5g23650) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872065.10.0transcription factor SRM1
TrEMBLD7M2B80.0D7M2B8_ARALL; Predicted protein
STRINGAl_scaffold_0006_22420.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-175Homeodomain-like transcriptional regulator