PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 861842 | ||||||||
Common Name | ARALYDRAFT_661286 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 366aa MW: 40708.7 Da PI: 6.2482 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.5 | 1.1e-31 | 58 | 199 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgyWka 85 lp+G++F+Ptdee++ e+L++k+ + + + v ++v+i++++P++Lp v+++ ++++fF k++++y++g rk+r +s +W++ 861842 58 LPKGVKFEPTDEEVI-EHLEAKCGIDGlkphllI---QdficsVTQDVGINYTHPQNLP-GVNKDGTSVFFFNKTAHAYQNGLRKRRRitptslkDESVRWHK 155 799************.99****877775566552...03444478999***********.6778899*******************95455544434899*** PP NAM 86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 tg++k+v++ +g ++g+kk++v+yk + k+ek++Wv+h+y+l 861842 156 TGQTKPVIV-NGVQKGCKKIMVLYKSarKGFKPEKSNWVLHQYHL 199 *********.999***********6422555778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-36 | 45 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.021 | 58 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-13 | 59 | 199 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MKTLHRTWIV DGPWIARNVK NASVSSALQI KDCEAYINCP NCYYRVDNRN LLTPWPGLPK 60 GVKFEPTDEE VIEHLEAKCG IDGLKPHLLI QDFICSVTQD VGINYTHPQN LPGVNKDGTS 120 VFFFNKTAHA YQNGLRKRRR ITPTSLKDES VRWHKTGQTK PVIVNGVQKG CKKIMVLYKS 180 ARKGFKPEKS NWVLHQYHLG TEEGEIGEYV VSKITYQQPK QWEKTMDESE SSGARGGPTT 240 PKTTTPTQAK PVISVDEDDI AYDDTKMVHD TFAEGQDNIQ EASYGSTSDR GAQVAGNLSV 300 IEDNLVSKKI EASSSLVEKN LNYGNADIGS GNFSMTDLEN ADLGTLPDFF SLASEDSLLN 360 WLGWF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 139 | RKRRR |
2 | 136 | 140 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 861842 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163792 | 0.0 | AL163792.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project). | |||
GenBank | AL163817 | 0.0 | AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project). | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002873670.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 3e-73 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | D7M6K1 | 0.0 | D7M6K1_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0006_1351 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14490.1 | 0.0 | NAC domain containing protein 85 |
Link Out ? help Back to Top | |
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Phytozome | 861842 |
Entrez Gene | 9307692 |