PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 861820
Common NameARALYDRAFT_661264
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 554aa    MW: 62015.5 Da    PI: 9.2926
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
861820genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.28.1e-3649145298
  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
             +++r+w+eeDe+++L+Gl+df+aktg +++ d++afy fv++si+++vsk+q+++K ++LKkKf ++++k+++g +p+f+++ d+++f++s++iWg+
  861820  49 MSNRIWNEEDELSILKGLLDFRAKTGLESKIDWEAFYCFVRGSIHVQVSKDQVLNKTKKLKKKFLNHMEKINRGIDPHFTRSIDSEAFGFSMMIWGK 145
             689********************************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.5E-2751144IPR007592Protein of unknown function DUF573
SMARTSM007243.4E-43343548IPR006634TRAM/LAG1/CLN8 homology domain
PROSITE profilePS509229.541343553IPR006634TRAM/LAG1/CLN8 homology domain
PfamPF037981.6E-13350540IPR006634TRAM/LAG1/CLN8 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MATPTELDFS SPGGAGDDNT PRKRTSKRTA SETVTAEETK KKNKLASPMS NRIWNEEDEL  60
SILKGLLDFR AKTGLESKID WEAFYCFVRG SIHVQVSKDQ VLNKTKKLKK KFLNHMEKIN  120
RGIDPHFTRS IDSEAFGFSM MIWGKNDAEY TNGATDKTYQ NKSDEEMFKK DEEVALIDNG  180
AGKSDFDGKS PPLKAVVVDK ITTKNGTAGK EGDDVLCAVR DAFETTMVSQ GLSDYQKKLQ  240
LEKLMNLGTG KKRELSNEWK ALCVEELKLN IKKLRFSAKL AEAANDDDKY SSSSSIVVRV  300
ENPISMSINI GEFSIPDLPL FFSMFLTIYL IAYFIVFRNW KPQIRPEASS CLISIFHGTP  360
AVFLATRAVF SSSARSFASA NTAAQNTVLD FSVAYFLTDL FHYIVFNPND VLFIGHHLAT  420
LFVFLTCRFL VFHGACAILG LLILAEVTSA CQNAWTLAGA RKNDPESRLA VKVYDLLSPP  480
FYAFYSIVRG VLGPLFFGKM VAFYARGGAH GVIPNWLWIS WAIVVGTAIT VSILWIWNLW  540
IELFRQRKAK KIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMap861820
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175480.0AK117548.1 Arabidopsis thaliana At5g14280 mRNA for unknown protein, complete cds, clone: RAFL17-19-N04.
GenBankAL1638170.0AL163817.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F18O22 (ESSA project).
GenBankAY0756160.0AY075616.1 Arabidopsis thaliana AT5g14280/F18O22_70 mRNA sequence.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876219.10.0GLABROUS1 enhancer-binding protein-like 2 isoform X1
TrEMBLD7M6220.0D7M622_ARALL; Predicted protein
STRINGAl_scaffold_0006_13290.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM187655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14280.10.0DNA-binding storekeeper protein-related