 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
860820 |
| Common Name | ARALYDRAFT_660264 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
bHLH |
| Protein Properties |
Length: 243aa MW: 28013.8 Da PI: 9.8236 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 860820 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 42.7 | 1e-13 | 69 | 118 | 1 | 52 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIk 52
++ +hn+ Er RR+++N ++ Lr+llP + +++Kls +++ ++v+YI
860820 69 KKLNHNASERDRRRKLNALYSSLRDLLPLsD---QKRKLSIPMTVARVVKYIP 118
6789*************************66...9999**************6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010106 | Biological Process | cellular response to iron ion starvation |
| GO:0055072 | Biological Process | iron ion homeostasis |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MEYPWLQSQA DSFSPTLQYL PSFLYPLDDS KSYNINLYPH HIRLTRHSND TNSNCNNDQE 60
EVRGTVLEKK LNHNASERDR RRKLNALYSS LRDLLPLSDQ KRKLSIPMTV ARVVKYIPEQ 120
KQELQRLSRR KEELLKRISR KTHQEQLRNK AMMDSIDSSS SQRIAANWLT DTEIAVQIAT 180
SKWTSVSDML LRLEENGLNV ISVSSSVSST ARIFYTLHLQ MRGDCKVRLE ELINGTLLGL 240
GH*
|
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ519810 | 0.0 | AJ519810.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor. |
| GenBank | DQ446915 | 0.0 | DQ446915.1 Arabidopsis thaliana clone pENTR221-At5g04150 basic helix-loop-helix family protein (At5g04150) mRNA, complete cds. |
| GenBank | DQ653262 | 0.0 | DQ653262.1 Arabidopsis thaliana clone 0000017164_0000012012 unknown mRNA. |
| Publications
? help Back to Top |
- Maurer F,Naranjo Arcos MA,Bauer P
Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid.
PLoS ONE, 2014. 9(6): p. e99234
[PMID:24919188] - Martínez-Trujillo M, et al.
Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
Plant Mol. Biol., 2014. 86(1-2): p. 35-50
[PMID:24928490] - Li X,Zhang H,Ai Q,Liang G,Yu D
Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
Plant Physiol., 2016. 170(4): p. 2478-93
[PMID:26921305] - Van Dingenen J, et al.
Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
Plant Cell Environ., 2017. 40(9): p. 1748-1760
[PMID:28444690] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
Plant J., 2018. 94(1): p. 157-168
[PMID:29396986] - Kurt F,Filiz E
Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
Biometals, 2018. 31(4): p. 489-504
[PMID:29546482]
|
