PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 396aa MW: 44969.4 Da PI: 8.3818

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
860242	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.2	1.4e-25	11	60	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++ 860242 11 SSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 60 799*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.4E-5	1	61	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-14	19	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-15	20	94	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.601	20	62	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.06E-16	25	86	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MTIRSLPSSS SSSSYSLAST SLSNRLETIF KKASELCTLC DIEACVIYYG PDGELKTWPK 60 EREKVRDIAL RYSQLNEALR RKKRVNLYDF LNKKKEKGLK NPNKKRKTSL KKVNELKYPI 120 SDHYSPDQIS KLIQSLELNV SKVQERLRFV ESQKQNETKP DHQGLASTSL NQQTQSLNPS 180 QFSLFIYNHG DNTLSQIPVS ASNFNQDFSA LLQESEFKNQ LVKQELCGYD QNMCMSNITN 240 NSFQHPCVSN KEHYSAVQES VNNYELNQLM QKEFYGCDQK LSNINSNKFQ HPCVSNTQHN 300 SAVQESVDNP WLNQLMQHEL YGFDQNLCSS DITNSNVPNP GLSNTVSYEL GSDFLDSCGN 360 MVAKPSEKSL KIMRNFSEQY GRRSAQGPTS VLIKV*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MTIRSLPSSS SSSSYSLAST SLSNRLETIF KKASELCTLC DIEACVIYYG PDGELKTWPK  60
EREKVRDIAL RYSQLNEALR RKKRVNLYDF LNKKKEKGLK NPNKKRKTSL KKVNELKYPI  120
SDHYSPDQIS KLIQSLELNV SKVQERLRFV ESQKQNETKP DHQGLASTSL NQQTQSLNPS  180
QFSLFIYNHG DNTLSQIPVS ASNFNQDFSA LLQESEFKNQ LVKQELCGYD QNMCMSNITN  240
NSFQHPCVSN KEHYSAVQES VNNYELNQLM QKEFYGCDQK LSNINSNKFQ HPCVSNTQHN  300
SAVQESVDNP WLNQLMQHEL YGFDQNLCSS DITNSNVPNP GLSNTVSYEL GSDFLDSCGN  360
MVAKPSEKSL KIMRNFSEQY GRRSAQGPTS VLIKV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	106	KKKEKGLKNPNKKRK
2	93	105	KKEKGLKNPNKKR
3	98	106	LKNPNKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	860242

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB010072	0.0	AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBank	BT030016	0.0	BT030016.1 Arabidopsis thaliana At5g41200 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020872955.1	0.0	agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-169	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJI6	0.0	D7MJI6_ARALL; Predicted protein
STRING	Al_scaffold_0007_3741	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-166	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	860242
Entrez Gene	9306833

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]