PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 860042
Common NameARALYDRAFT_659486
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 210aa    MW: 24074.8 Da    PI: 4.0857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
860042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.72.2e-23101241119
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelv 100
             lp G+rF+P+d e+ v++L++k+ g ++++ ++ +e+ di++++P+dLp   +++e++wyf++++ k++ t +++        W  tg++++vl+   +gelv
  860042  10 LPIGMRFRPSDLEMAVYFLRNKALGLTIKARTIPEEChDIFSIHPRDLP--GYGSEEHWYFYCQKTKNQVTTTKSYH-----LWIPTGEETDVLDPkkNGELV 105
             699***************************77777779***********..345789*******9998765443333.....6***********98778899* PP

     NAM 101 glkktLvfykgrapkgekt 119
             g+k++++f ++++++ +++
  860042 106 GIKRSFAFIENEEEEEQES 124
             *********8777766554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-295167IPR003441NAC domain
PROSITE profilePS5100528.13110167IPR003441NAC domain
PfamPF023651.2E-1011147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGPTYRDMPL PIGMRFRPSD LEMAVYFLRN KALGLTIKAR TIPEECHDIF SIHPRDLPGY  60
GSEEHWYFYC QKTKNQVTTT KSYHLWIPTG EETDVLDPKK NGELVGIKRS FAFIENEEEE  120
EQESDNNNNG LSDEEEKPPQ YNWFLDEISL PLTVLDTDWV LCHIFNEKVK PECVNLLPAI  180
IESESESDPS EVEDEEEDET VLPPPPASP*
Cis-element ? help Back to Top
SourceLink
PlantRegMap860042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870653.11e-153NAC domain-containing protein 41
TrEMBLD7MIZ31e-152D7MIZ3_ARALL; Predicted protein
STRINGAl_scaffold_0007_35411e-153(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41090.16e-87NAC domain containing protein 95