PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 860034
Common NameARALYDRAFT_659478
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 327aa    MW: 37737.7 Da    PI: 8.9879
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
860034genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573751.4e-23123205497
  DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
             ++ ws+eDei++L G++d++++  +s+ +  dafy+++++ +++++sk+ql++K+++LKk+f++++++           +  +++f+lsk+iW 
  860034 123 KMTWSKEDEISILSGILDYQEESQSSYNQKYDAFYDYMREYMESDFSKKQLMDKVKKLKKRFRENQAR-----------SRREEVFKLSKIIWA 205
             789****************************************************************9...........334567888888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-18123204IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
KLSYFGRILQ YQETGVIIFE VNKIDIETPR AGPMKSGPHF CSGDRHRDTQ SNTKKLKLSQ  60
TPFSFCTTQT RNIALKSDPE SRPMLSSPLK RKHDDDYEIS GLRRRKLPKT RGTFVPSSSA  120
SLKMTWSKED EISILSGILD YQEESQSSYN QKYDAFYDYM REYMESDFSK KQLMDKVKKL  180
KKRFRENQAR SRREEVFKLS KIIWAKKETE HAYEENKDQT KEDVPCAERE RASNANTEIN  240
NGEKKKIEED GVDDLCVLLG ALEASTSFQS LNENLQKFLL QNMKNVGANQ RKELTDEWKT  300
LLAEDMELDV KKLTFSAKLV NVGFSA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
189105KRKHDDDYEISGLRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap860034
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SJM42e-29STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLD7MIY50.0D7MIY5_ARALL; Predicted protein (Fragment)
STRINGAl_scaffold_0007_35330.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14516816
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.12e-22DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]