PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 859664
Common NameARALYDRAFT_659108
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 109aa    MW: 12024.2 Da    PI: 5.0905
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
859664genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY51.52e-1678107130
             ---SS-EEEEEEE--TT-SS-EEEEEE-ST CS
    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa 30 
             ++DgynWr YGqK vkg+e +rsYY+Ct++
  859664  78 MQDGYNWRIYGQKLVKGNELTRSYYKCTQP 107
             58**************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134563.7E-10663No hitNo description
PROSITE profilePS5081114.45873108IPR003657WRKY domain
SuperFamilySSF1182903.53E-1374107IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-1375107IPR003657WRKY domain
SMARTSM007741.3E-478108IPR003657WRKY domain
PfamPF031065.2E-1179106IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MDSLNVTGGW LIRDHSGFTK SLASASLSQA ASPLEAETRS LLAASQHTWE RGFSDVIFEG  60
DCESGSEGNN PFIRENVMQD GYNWRIYGQK LVKGNELTRS YYKCTQPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMap859664
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373271e-101AC237327.1 Arabidopsis lyrata clone JGIFAFI-37B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7MHV17e-76D7MHV1_ARALL; Predicted protein
STRINGAl_scaffold_0007_31631e-76(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.11e-23zinc-dependent activator protein-1