PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 859202 | ||||||||
Common Name | ARALYDRAFT_658646 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HSF | ||||||||
Protein Properties | Length: 179aa MW: 21100.8 Da PI: 4.735 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 59 | 1.3e-18 | 12 | 99 | 1 | 97 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 +F++ +y +++d + ++isws++g+sf+++++eef++++L+++Fk++++ F L++ F+k+++++ w F++++F +++ +l+++i 859202 12 SFITTTYVMVDDLSSYSIISWSQSGKSFIIWNPEEFSSNLLQRFFKTNSLDLFFFNLEIHCFRKIDSRK---------WDFANDNFVRDQPHLINNI 99 59***************************************************************9988.........****************998 PP | |||||||
2 | HSF_DNA-bind | 28 | 5.6e-09 | 146 | 177 | 1 | 32 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES- CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvld 32 +Fl+k ye+++d++ ++++sws++g+sf++++ 859202 146 SFLTKAYEMVDDPSSDKIVSWSQSGKSFIIWN 177 59*****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.4E-23 | 6 | 96 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-25 | 9 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.14E-20 | 10 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.3E-6 | 13 | 36 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.8E-19 | 13 | 99 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-6 | 51 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-6 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.1E-9 | 138 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-7 | 144 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-5 | 147 | 177 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MNEKGDSSTS LSFITTTYVM VDDLSSYSII SWSQSGKSFI IWNPEEFSSN LLQRFFKTNS 60 LDLFFFNLEI HCFRKIDSRK WDFANDNFVR DQPHLINNII SFMIEERDQL DRKMDMIKAE 120 RLFTMQVKEV EDQLQPNRCY PNEQHSFLTK AYEMVDDPSS DKIVSWSQSG KSFIIWNP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 859202 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870020.1 | 2e-76 | heat stress transcription factor C-1 | ||||
Swissprot | O49403 | 5e-24 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | D7MAE6 | 1e-128 | D7MAE6_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_2701 | 1e-128 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20171 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18870.1 | 4e-64 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | 859202 |
Entrez Gene | 9306288 |
Publications ? help Back to Top | |||
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