PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 857774
Common NameARALYDRAFT_657218
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NAC
Protein Properties Length: 304aa    MW: 33592.7 Da    PI: 9.2697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
857774genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.73.5e-34592001128
     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sgyWkat 86 
             lp+G++F+Ptd+e++ e+L+ k++++       ++  e   +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++       + +W++t
  857774  59 LPAGVKFDPTDQEVL-EHLEGKIRDDAkklhplID--EfirTIDGEnGICYTHPEKLP-GVNKDGTVRHFFHRPSKAYTTGTRKRRKVHtdsdvggETRWHKT 157
             799**********99.99*****999966654422..22223554445**********.677788899******************7443455555788**** PP

     NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
             gk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  857774 158 GKTRPVLA-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
             ********.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-3853219IPR003441NAC domain
PROSITE profilePS5100533.20859219IPR003441NAC domain
PfamPF023654.4E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTWCNDRSDV QTVERIIPSP PAPESPVASL PVSCHKTCPS CGHNFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLEHLEGKI RDDAKKLHPL IDEFIRTIDG ENGICYTHPE KLPGVNKDGT  120
VRHFFHRPSK AYTTGTRKRR KVHTDSDVGG ETRWHKTGKT RPVLAGGRVR GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTSEEEKEGE LVVSKVFYQT QPRQCGGSAA ATAKDRPYLH  240
GLGGGGGRHL HYHLHHNNGN GKSNSGGGSA GAGEYYHNIP ALISFNQTGI QNHLVHDSQP  300
FIP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap857774
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0566580.0DQ056658.1 Arabidopsis thaliana no apical meristem family protein (At4g28500) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869497.10.0NAC domain-containing protein 73
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLD7MDB70.0D7MDB7_ARALL; Predicted protein
STRINGAl_scaffold_0007_12730.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.10.0NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]