PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 857479
Common NameARALYDRAFT_656923
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 298aa    MW: 33997.2 Da    PI: 4.6929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
857479genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.51.9e-091997280
  trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80
              W  +  l L++    +e + +++ +  ++W  + +++ +  ++r+ +qC+ kw++l  +y +ik++e++ + + +s ++
    857479 19 WAVKDCLILVNEIAAVEADCSNALSSFQKWTMILENCNALDVRRNLNQCRRKWDSLMSDYNQIKQWESQYRGTGRSYWS 97
              88888899999999999999999999******************************************98777776776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-71994No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEEGTSGSRR TRSQVAPEWA VKDCLILVNE IAAVEADCSN ALSSFQKWTM ILENCNALDV  60
RRNLNQCRRK WDSLMSDYNQ IKQWESQYRG TGRSYWSLSS DKRKLLNLPG NIDIELFEAI  120
SAVVMIQDEK AGTESDSDPE AQDVVDITAE LAFVGSKRSR QRTIVMKENP PQKTKKEEPQ  180
ISRVQVNTRE KPITAKATHQ KKTMEEKRPM EEISTDEEEE EETMNIEEEV EVMEAKLSYK  240
IDLIHAIVGR NLAKDNETRD GINTDDKLKF VRQQGDELIG CLSEIVSTLN RLREVPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KRSRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMap857479
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1186740.0AK118674.1 Arabidopsis thaliana At4g31270 mRNA for unknown protein, complete cds, clone: RAFL19-94-K08.
GenBankBT0052870.0BT005287.1 Arabidopsis thaliana At4g31270 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867306.10.0trihelix transcription factor ASR3 isoform X1
TrEMBLD7MB820.0D7MB82_ARALL; Predicted protein
STRINGAl_scaffold_0007_9780.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121542328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.10.0sequence-specific DNA binding transcription factors