|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
857250 |
Common Name | ARALYDRAFT_656694 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
Family |
B3 |
Protein Properties |
Length: 340aa MW: 38881.2 Da PI: 6.7833 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
857250 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 50.2 | 4.7e-16 | 35 | 114 | 14 | 98 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
rl +p kf ++++ k ++ +tl+++sg +++v++ + +++ ++ GW +Fvk++ L+e+D +vFk++g sef v vf+
857250 35 YRLAIPQKFSTHCKRK--LPQIVTLKSPSGATYSVRV--EEDDEKtLAFGFGWDKFVKDHSLEENDLLVFKFHGLSEF--EVLVFD 114
589*******888766..7889***************..777766699***********************9887999..777776 PP
|
2 | B3 | 61.9 | 1e-19 | 224 | 312 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sef 90
f+ + +s+vl+++ l++p k + ++++ ++ +++ ++ + r+W++k+++ + +g+ +++GWk+Fv++n+L+egD++vF+ ++ +
857250 224 FLVFMRRSHVLSKCFLTIPYKWCVKNMLMARQ--EVV-MQVDQRKWDMKFNFFGARGSGGISTGWKKFVQDNNLREGDVCVFEPANSvtKPL 312
6677899*******************888666..455.56799*******996666666699*********************654313333 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 340 aa
Download sequence Send
to blast |
MEESCEDCMK WEEELYWTHF QTLHFTQLLL PGFHYRLAIP QKFSTHCKRK LPQIVTLKSP 60 SGATYSVRVE EDDEKTLAFG FGWDKFVKDH SLEENDLLVF KFHGLSEFEV LVFDGQTLCE 120 KPTSYFVRKC GHAEKTKVSQ TGYEQEEHIN PDIDTASAQL PVISPTSTVR VSERKYHPLS 180 SFKKMRGEIS NDNLDQKTDV EMISAGSNNR ALSLAKGAIS PDGFLVFMRR SHVLSKCFLT 240 IPYKWCVKNM LMARQEVVMQ VDQRKWDMKF NFFGARGSGG ISTGWKKFVQ DNNLREGDVC 300 VFEPANSVTK PLHLNVYIFC GEETERSKNV DSVHTISSE*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AJ441117 | 0.0 | AJ441117.1 Arabidopsis thaliana mRNA for auxin response factor 36 (arf36 gene). |