PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856771
Common NameARALYDRAFT_656215
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 303aa    MW: 34891.6 Da    PI: 8.3734
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856771genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.74.5e-12195251561
             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
             ++ +r+++NRe+A+rsR RK+  i++L++ v  L+ eN++L ++l+    + +++ s
  856771 195 RKRKRMESNRESAKRSRMRKQSHIDNLRDQVNRLDLENRELGNRLQLVLYQLQRVNS 251
             577999***********************************9999876666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-11183247No hitNo description
SMARTSM003382.0E-15191255IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.921193256IPR004827Basic-leucine zipper domain
PfamPF001701.7E-9195241IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.18E-10195247No hitNo description
CDDcd147022.23E-18196243No hitNo description
PROSITE patternPS000360198213IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MCCLYSIIYG RTSYFTNMTK LPLWFANKYQ APTMQFFPFP LLISLISLLE KILAIMLSTV  60
PAFSFSEPGL VNQFSGFQTG FTPWEWGCSD LFSVDQMFLE PAVPSPCDGE SDTGSVKINS  120
GSHDMKTGSD VSCAGFVKTN SSFDDANRSN GLPCSQADEP DSDDSKQLTA ISNFGSGEHN  180
RNRKKLIQPE MTDERKRKRM ESNRESAKRS RMRKQSHIDN LRDQVNRLDL ENRELGNRLQ  240
LVLYQLQRVN SDNNRLVTEQ EILRLRLSEM RRILIIRQLQ QRQQWELHNR RMIMTEQNHP  300
HL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182198RKKLIQPEMTDERKRKR
2207212KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMap856771
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937250.0AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730.
GenBankAL0357090.0AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project).
GenBankAL1615920.0AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875486.10.0basic leucine zipper 63
TrEMBLD7MA100.0D7MA10_ARALL; Predicted protein
STRINGAl_scaffold_0007_2700.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-156basic leucine-zipper 7