PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 856577
Common NameARALYDRAFT_656021
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 570aa    MW: 62742.3 Da    PI: 7.0624
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
856577genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.38.1e-094234661053
             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1  10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                NR +A rs +RK  +i eLe kv++L++e ++L  +l  l+
  856577 423 ILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQ 466
             567**********************************9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-15408478IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.51E-10422469No hitNo description
PROSITE profilePS502179.266422479IPR004827Basic-leucine zipper domain
CDDcd147031.10E-21422468No hitNo description
Gene3DG3DSA:1.20.5.1708.5E-10422469No hitNo description
PfamPF001703.8E-7422466IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MGDTEKCSNS DMIQRLHSSF GTSSSSIPKN PISQLDLNPN FIRSSAPLFS KPFSDSGKRI  60
GVPPSHPNLI PPTSPFSQIP TTRQPASLNF NPGSATHSRS MSQPNSFFSF DSLPPLSPSP  120
FRDSLSAQPD HDVSMEDRDS GGFNSNHSLP PSPFTRCNST SSSSLRVGES LPPRKSHRRS  180
NSDIPSGFNS MIVQNSLPLI PPRPLERSIS GGECADWSKS SPFVKKESSC EREGVGEREA  240
MDDLFSAYMN LENIDVLNSS EADDSKNGNE NRDDMDSSRA SGTKTNGSDT EGESSSVNES  300
ANNNSNLNSS GEKRESVKRR AAGGDIAPTT RHYRSVSVDS CFMEKLSFGD ESLKPPPSPG  360
TMSRKVSPTN SVDGNSGAAF NIEFKNGEFT AAEMKKIMAN DKLAEMAMSD PKRVKRNDLL  420
FRILANRQSA ARSKERKMRY IVELEHKVQT LQTEATTLSA QLTLLQRDMI GFTNQNNELK  480
FRLQAMEQQA RLRDALNEAL NGEVQRLKLA IGETSQNESE RSKMQSLNAE MFQQLNISQL  540
RQQPQQMQQQ SHQQNHQNGT MATKSESNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMap856577
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4012970.0AF401297.1 Arabidopsis thaliana transcription factor bZIP29 (BZIP29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872762.10.0probable transcription factor PosF21
TrEMBLD7MFP70.0D7MFP7_ARALL; Predicted protein
STRINGAl_scaffold_0007_760.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.10.0bZIP family protein