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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 856016 | ||||||||
Common Name | ARALYDRAFT_655385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 21262.9 Da PI: 5.0871 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.6e-17 | 42 | 91 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ t+e+Aa+a++ a+++l+g 856016 42 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYTTPEMAAAAYDVAALALKG 91 68****9.55.6*********854...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-9 | 42 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-18 | 43 | 101 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.2E-27 | 43 | 107 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.612 | 43 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-26 | 43 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.56E-16 | 44 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MADPKTPITE PKARSQSSSS SGNDINTLMA TDADISRRKK RPVYRGIRCR SGKWVSEIRE 60 PKKTTRVWLG TYTTPEMAAA AYDVAALALK GGDTVLNFPD SVGSYPSPLS SSAAHIRCAA 120 AAAAAARGAA AAAVKGGEKK EEEVCDTAGS STMGFVDEEE LLNMPGLLAD MAKGMMVAPP 180 WMGSPPSDDS PENSDGESLW SY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 856016 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC010795 | 0.0 | AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence. | |||
GenBank | AY560842 | 0.0 | AY560842.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g63040) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020865977.1 | 1e-139 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF026 | ||||
Refseq | XP_020871991.1 | 1e-139 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF026 | ||||
Swissprot | Q9CAN9 | 2e-96 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | D7MWZ2 | 1e-144 | D7MWZ2_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0240_1 | 1e-145 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 856016 |
Entrez Gene | 9298759 |