PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 84560
Common NameLAS-2, SELMODRAFT_95651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 468aa    MW: 51046.7 Da    PI: 6.2673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
84560genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.31.1e-102614651373
   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.....................kl 83 
            l+elL+ecA  v+s+d ++a ++L +ls  asp+gd+++Rla+yf  ALa+ l + ++ +++ +++     +n    l  +                      +
  84560  61 LRELLVECAASVTSSDWHRAIRCLVHLSRAASPHGDAVERLAFYFSAALARCLCSLSTPCASEIRSLLRL-NNLHFLLEEDqpppsfeddlfyysggaeeayLA 163
            689****************************************************777777777665554.343333333356666677777778888766455 PP

   GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp.......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
            +++v+P+++fshl aNqaIleav++e++vHi+D++i+qGlQWp+L+qaL  +         + + +lRiTg g+    s   le+tg rL++fA++l+++fef+
  84560 164 LNQVTPFIRFSHLSANQAILEAVDNERAVHIVDLGIMQGLQWPPLMQALPpT-LsssssssSTTLTLRITGTGP----SISLLEQTGARLRDFARTLHLDFEFD 262
            ************************************************9632.2233343233559********....9************************* PP

   GRAS 180 vl..vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklprese 280
            ++  +++++ +   ++L++++gEal+Vn++ qlh+ll  +++ + + ++ L++++sl P++++v+e+e++h  s+sFlerfl +l++y+a+fdslea+lp+ s 
  84560 263 AVctTSRHVVASLQQHLELRRGEALVVNCMTQLHKLL--PAAHRAALPHALEFMRSLCPRILTVAEKESEHdLSQSFLERFLVTLDHYVAVFDSLEATLPPRSP 364
            *843333333345678*********************..66666778************************889****************************** PP

   GRAS 281 erikvErellgreivnvvacegaerre.....rhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyr..veeesgslvlgWkdrpLvsvSaW 373
            +r ++Er +l++ei+ +v   g    e     rh+++++Wr+ +e+aGF+ vp s++a +qaklllr ++  dgyr  ve+++gsl+l W+d+pLv++S W
  84560 365 QRLMIERLVLAKEISGIVLEDGGGDDEnlavvRHQSFGNWRRDMEAAGFQLVPPSDFAIAQAKLLLRLHYpADGYRllVENQHGSLFLSWHDKPLVALSTW 465
            ******************998765433333449******************************************94346889****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.66535443IPR005202Transcription factor GRAS
PfamPF035143.8E-10061465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MQQQPPSSHQ HHHQEQPQFL GHTGGIGTGA GAGTGFGFGV GGAGSEGSSG GAGTHHNDGG  60
LRELLVECAA SVTSSDWHRA IRCLVHLSRA ASPHGDAVER LAFYFSAALA RCLCSLSTPC  120
ASEIRSLLRL NNLHFLLEED QPPPSFEDDL FYYSGGAEEA YLALNQVTPF IRFSHLSANQ  180
AILEAVDNER AVHIVDLGIM QGLQWPPLMQ ALPPTLSSSS SSSSTTLTLR ITGTGPSISL  240
LEQTGARLRD FARTLHLDFE FDAVCTTSRH VVASLQQHLE LRRGEALVVN CMTQLHKLLP  300
AAHRAALPHA LEFMRSLCPR ILTVAEKESE HDLSQSFLER FLVTLDHYVA VFDSLEATLP  360
PRSPQRLMIE RLVLAKEISG IVLEDGGGDD ENLAVVRHQS FGNWRRDMEA AGFQLVPPSD  420
FAIAQAKLLL RLHYPADGYR LLVENQHGSL FLSWHDKPLV ALSTWSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-566746625379Protein SCARECROW
5b3h_A3e-566746624378Protein SCARECROW
5b3h_D3e-566746624378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965679.10.0scarecrow-like protein 18
TrEMBLD8RKA20.0D8RKA2_SELML; Uncharacterized protein LAS-2
STRINGEFJ274080.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-70GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]