PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 8371 | ||||||||
Common Name | MICPUCDRAFT_8371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | C2H2 | ||||||||
Protein Properties | Length: 81aa MW: 8951.19 Da PI: 10.1354 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00055 | 2 | 20 | 6 | 23 |
TTEEESSHHHHHHHHHH.T CS zf-C2H2 6 CgksFsrksnLkrHirt.H 23 Cg+sF++ + H r+ H 8371 2 CGRSFKHATQKAIHVRKvH 20 ****************999 PP | |||||||
2 | zf-C2H2 | 21.4 | 6.5e-07 | 26 | 50 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cg+sF ++ +Lk H +tH 8371 26 FTCEheGCGRSFYSSGDLKAHGKTH 50 89*********************99 PP | |||||||
3 | zf-C2H2 | 25.8 | 2.7e-08 | 56 | 79 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cgks s++ +Lk+Hi+ H 8371 56 FECPECGKSMSSRNSLKVHIKAlH 79 89******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 97 | 1 | 20 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.676 | 1 | 25 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-6 | 2 | 24 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.38E-15 | 20 | 74 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.7E-13 | 25 | 46 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.048 | 26 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.568 | 26 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 28 | 50 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.052 | 33 | 50 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-10 | 47 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.487 | 56 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.3E-4 | 56 | 79 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13894 | 1.6E-5 | 56 | 79 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 58 | 79 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
GCGRSFKHAT QKAIHVRKVH TGERPFTCEH EGCGRSFYSS GDLKAHGKTH STTKPFECPE 60 CGKSMSSRNS LKVHIKALHT L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mey_C | 9e-16 | 2 | 77 | 10 | 82 | CONSENSUS ZINC FINGER |
1mey_F | 9e-16 | 2 | 77 | 10 | 82 | CONSENSUS ZINC FINGER |
1mey_G | 9e-16 | 2 | 77 | 10 | 82 | CONSENSUS ZINC FINGER |
2i13_A | 2e-15 | 2 | 76 | 27 | 182 | Aart |
2i13_B | 2e-15 | 2 | 76 | 27 | 182 | Aart |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003058558.1 | 2e-53 | predicted protein, partial | ||||
Swissprot | Q6P2A1 | 7e-17 | PRDM9_DANRE; Histone-lysine N-methyltransferase PRDM9 | ||||
TrEMBL | C1MRS3 | 5e-52 | C1MRS3_MICPC; Predicted protein (Fragment) | ||||
STRING | XP_003058558.1 | 9e-53 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10650 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 1e-11 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 8371 |
Entrez Gene | 9684364 |
Publications ? help Back to Top | |||
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