PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 82663
Common NameSELMODRAFT_450176
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 306aa    MW: 34962.4 Da    PI: 8.2881
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
82663genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS180.61.2e-551930289374
   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
            P +++++  a   I +  +g++r+Hi+D++i++G QWp  ++aL++Rp+gpp ++iTg++      +  ++etg++L +fA+++gv+++f++++++++e ++++
  82663  19 PSFRVTQRFAACNIFNVCQGAKRIHIVDYGIQYGCQWPHVIKALSQRPQGPPAMKITGIDL----PRVDVKETGRNLVEFARSCGVSLDFDAITSTSWELVQPK 118
            899999999999*************************************************....89*************************999999999886 PP

   GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv..vveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgre 293
               ++ ++ l+Vn+ l+l +l ++    +++r+ + + v sl+P++++  v +  ++++s+ F +rf   l++  + ++ +e+ l +e+  e+      +++++
  82663 119 ---THVEDLLIVNCNLRLRHLREDGSVGNNPRKLFFEKVYSLKPDLFIqcVLDATSNLSSPFFIQRFEGVLDTLFTRMELFETLLLQEDmPEEYDFMGSIIAKA 219
            ...56899*************866666666****************983344566777999******999999888888888877777766666666666**** PP

   GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll.rkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
            i++vva eg er+er +++++W +r ++aGF+ +p++ ++ + +k +  +  k ++ +++  + ++l+lgWk+  ++++SaWr
  82663 220 IMDVVALEGVERIERANSYRTWDSRARRAGFELLPVRLETIEVVKDVWcSSSKlNNNFKLGVDGHWLLLGWKESIVFAMSAWR 302
            ********************************9998876655555443033334577*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.3861280IPR005202Transcription factor GRAS
PfamPF035144.0E-5319302IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVKGIRERHS VHVRLLNLPS FRVTQRFAAC NIFNVCQGAK RIHIVDYGIQ YGCQWPHVIK  60
ALSQRPQGPP AMKITGIDLP RVDVKETGRN LVEFARSCGV SLDFDAITST SWELVQPKTH  120
VEDLLIVNCN LRLRHLREDG SVGNNPRKLF FEKVYSLKPD LFIQCVLDAT SNLSSPFFIQ  180
RFEGVLDTLF TRMELFETLL LQEDMPEEYD FMGSIIAKAI MDVVALEGVE RIERANSYRT  240
WDSRARRAGF ELLPVRLETI EVVKDVWCSS SKLNNNFKLG VDGHWLLLGW KESIVFAMSA  300
WRTSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1532302101375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002965365.10.0scarecrow-like protein 31
TrEMBLD8R1490.0D8R149_SELML; GRAS family protein
STRINGEFJ342030.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.15e-48GRAS family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]