![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 80923 | ||||||||
Common Name | SELMODRAFT_80923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | E2F/DP | ||||||||
Protein Properties | Length: 277aa MW: 31017.2 Da PI: 9.4887 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 89.8 | 1.8e-28 | 17 | 97 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +k+Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg 80923 17 GKGLRHFSMK---VCEKVESkGRTTYNEVADELVAEftnpnglvgspdqqyDEKNIRRRVYDALNVLMAMDIISK-EKKEIQWKG 97 79********...*****999******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.0E-46 | 12 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.7E-34 | 15 | 97 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.58E-22 | 18 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.7E-26 | 18 | 97 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF144074 | 1.57E-39 | 104 | 231 | No hit | No description |
SMART | SM01138 | 4.9E-57 | 104 | 274 | IPR014889 | Transcription factor DP, C-terminal |
CDD | cd14458 | 8.35E-44 | 105 | 206 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 1.4E-38 | 105 | 211 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 277 aa Download sequence Send to blast |
RKKKRGHRAA IGGEKGGKGL RHFSMKVCEK VESKGRTTYN EVADELVAEF TNPNGLVGSP 60 DQQYDEKNIR RRVYDALNVL MAMDIISKEK KEIQWKGLPS TSFTDAEQLK EEQLRVRSRI 120 EKKKKYLQEL QDQIVGIQNL IHRNERMYNG TGNFPAGGVA LPFILVQTRP QATVEVEISE 180 DMQVVHFDFN SSPFELHDDA SILKAMNFCD PGSKPGGGSK HENGGFDASP MDDGSSPLPS 240 MYHHHHHHGR SPRMMKNGLS PPPLPGILKA RVKQEH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-43 | 13 | 102 | 5 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC158179 | 1e-131 | Selaginella moellendorffii clone JGIASXY-5A11, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002964245.2 | 0.0 | transcription factor-like protein DPB isoform X5 | ||||
Swissprot | Q9FNY2 | 1e-111 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | D8R0G5 | 0.0 | D8R0G5_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ34578 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-114 | Transcription factor DP |
Link Out ? help Back to Top | |
---|---|
Phytozome | 80923 |
Entrez Gene | 9654876 |
Publications ? help Back to Top | |||
---|---|---|---|
|