PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 79899
Common NameMICPUN_79899
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 284aa    MW: 33265.7 Da    PI: 9.3223
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
79899genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06118141125
              --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
              +kt +C ff + G C  G +CkF+H
    79899 118 PKTIPCEFFKK-GRCAKGWKCKFSH 141
              79*********.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.1E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5119143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.197194232IPR000571Zinc finger, CCCH-type
SMARTSM003565.7195231IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPPKLSLADQ KKKLKEKAQR AKDQEKREKD KERAERKAQE QKDRIFGLKN KHTSKHAQQF  60
VQDVERNMKQ LPGEQQKAEA KKRENDKRKA AEEQAQRELD EMMGLAIKQP KVPEGVDPKT  120
IPCEFFKKGR CAKGWKCKFS HEKNTRKGTE KIDLFVDHRD DAEKEKDSDK MDDWDQDKLE  180
SVVKEKHSGE NQNNKTDIVC KHFLEAVEKR LYGWFWVCPN GGNECKYRHA LPPGYVLKSQ  240
LKAMMEEEKA SQRTDEEILE EERAKIGEGV PVTQDTFAEW KRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500608.10.0predicted protein, partial
SwissprotQ9SK742e-82C3H21_ARATH; Zinc finger CCCH domain-containing protein 21
TrEMBLC1E2700.0C1E270_MICCC; Uncharacterized protein (Fragment)
STRINGXP_002500608.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP326744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-73C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]