PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73854
Common NameSELMODRAFT_73854, SELMODRAFT_87463
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ERF
Protein Properties Length: 57aa    MW: 6530.43 Da    PI: 11.4886
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73854genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP270.14e-22150356
    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
           y+GVr+++ +g+W+AeIrdp+    + +r++lg+++tae+Aa+a++aa+ +++g+
  73854  1 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTYDTAEGAARAYDAAAINFRGH 50
           9*******.**********94....45*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.71E-18157No hitNo description
SMARTSM003803.4E-29157IPR001471AP2/ERF domain
PRINTSPR003673.8E-12112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32157IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23157IPR016177DNA-binding domain
PfamPF008471.2E-15150IPR001471AP2/ERF domain
PROSITE profilePS5103225.686157IPR001471AP2/ERF domain
PRINTSPR003673.8E-122339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
YRGVRRRPWG KWAAEIRDPK KAARVWLGTY DTAEGAARAY DAAAINFRGH RAKLNFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22157360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-22157663ATERF1
3gcc_A2e-22157663ATERF1
5wx9_A4e-221571572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024527331.15e-31transcription factor SPT20 homolog
RefseqXP_024527646.16e-31putative uncharacterized protein DDB_G0271606
SwissprotP930074e-28EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBLD8QQE82e-32D8QQE8_SELML; Uncharacterized protein (Fragment)
STRINGEFJ317033e-33(Selaginella moellendorffii)
STRINGEFJ384473e-33(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.24e-24ERF family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]