PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 57aa MW: 6578.64 Da PI: 10.9053

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73155	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.7e-19	1	50	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr ++ +g+Wv eIr+p++ r r++lg++ tae Aa+a++aa +l+g+ 73155 1 YKGVRMRS-WGKWVTEIREPKK---RSRIWLGSYATAEVAARAYDAALMCLRGP 50 9**998.******965...5***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.48E-25	1	57	No hit	No description
SuperFamily	SSF54171	2.29E-20	1	57	IPR016177	DNA-binding domain
SMART	SM00380	4.1E-28	1	57	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.194	1	57	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.0E-30	1	57	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-10	1	12	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-12	1	49	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.2E-10	23	39	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0034605	Biological Process	cellular response to heat
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071497	Biological Process	cellular response to freezing
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 57 aa Download sequence Send to blast
YKGVRMRSWG KWVTEIREPK KRSRIWLGSY ATAEVAARAY DAALMCLRGP SAQFNFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-16	1	57	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:21069430, ECO:0000269\|PubMed:27137403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00156	DAP	Transfer from AT1G21910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269\|PubMed:21069430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024528032.1	1e-35	ethylene-responsive transcription factor ERF017-like
Refseq	XP_024532118.1	1e-35	ethylene-responsive transcription factor ERF037-like
Swissprot	O22174	3e-27	ERF08_ARATH; Ethylene-responsive transcription factor ERF008
Swissprot	Q9SFE4	4e-27	ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBL	D8QMV0	3e-34	D8QMV0_SELML; Uncharacterized protein (Fragment)
STRING	EFJ31868	5e-35	(Selaginella moellendorffii)
STRING	EFJ37990	5e-35	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23340.1	1e-29	DREB and EAR motif protein 3

Link Out ? help Back to Top
Phytozome	73155
Entrez Gene	9631723 \| 9632263

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Sazegari S,Niazi A,Ahmadi FS A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes. Bioinformation, 2015. 11(2): p. 101-6 [PMID:25848171] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]