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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
71661 |
| Common Name | CBF2, SELMODRAFT_71661 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
| Family |
ERF |
| Protein Properties |
Length: 153aa MW: 17571.8 Da PI: 6.3539 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 71661 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 62.3 | 1.1e-19 | 3 | 54 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+ y GVr+++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++l+ge
71661 3 PVYIGVRRRS-WGKWVSEIREPKK---KNRIWLGSFPTPEMAARAHDVAALCLRGE 54
6799***887.**********854...59*************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 153 aa
Download sequence Send
to blast |
RHPVYIGVRR RSWGKWVSEI REPKKKNRIW LGSFPTPEMA ARAHDVAALC LRGEDAHLNF 60
PDSVHTLPRP ERLSPKCIQE AATSAAMSFQ DRLLPYTAPQ QQQQEQEEQP DQTERHEEQQ 120
NSQQPAKYVD EDFIFNMPTI LSSMAEALAV PLP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP6 | 16 | 1718 |
| Publications
? help Back to Top |
- Banks JA, et al.
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Science, 2011. 332(6032): p. 960-3
[PMID:21551031] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Guttikonda SK, et al.
Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
[PMID:25192890] - Zhang T, et al.
Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
Plant Physiol. Biochem., 2015. 94: p. 153-64
[PMID:26093308] - Carlow CE, et al.
Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
Plant Physiol. Biochem., 2017. 118: p. 306-319
[PMID:28675818] - Li B, et al.
Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
Plant Cell, 2018. 30(1): p. 178-195
[PMID:29317470]
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