PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 128aa MW: 14892.1 Da PI: 10.2047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
71469	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.5	5.4e-49	1	128	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglk 103 pGfrFhPtdeel+++yL++kve+k+l + evi+++diyk++Pw+Lp +++ +e+ yfF++rd+ky++++r+nr+t+ g+Wkatg+d+ v+s+ +++ +glk 71469 1 PGFRFHPTDEELLTFYLHRKVEHKPLAI-EVITQLDIYKFDPWELPaSSTGCGEQASYFFCPRDRKYRNSSRPNRVTSGGFWKATGTDRVVHSAkpGHKCIGLK 103 8***********************99.99***********44555688899*******************************98878888 PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k+Lvfykgra +++ktdW+mhe+r+ 71469 104 KSLVFYKGRAARPVKTDWMMHEFRM 128 *********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-51	1	128	IPR003441	NAC domain
Pfam	PF02365	6.8E-26	1	128	IPR003441	NAC domain
PROSITE profile	PS51005	50.636	1	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
PGFRFHPTDE ELLTFYLHRK VEHKPLAIEV ITQLDIYKFD PWELPASSTG CGEQASYFFC 60 PRDRKYRNSS RPNRVTSGGF WKATGTDRVV HSAKPGHKCI GLKKSLVFYK GRAARPVKTD 120 WMMHEFRM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-45	1	128	17	140	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024531169.1	7e-91	protein FEZ isoform X2
Refseq	XP_024539265.1	8e-91	protein FEZ isoform X2
Swissprot	Q9ZVH0	1e-65	FEZ_ARATH; Protein FEZ
TrEMBL	D8RHM7	4e-92	D8RHM7_SELML; Uncharacterized protein (Fragment)
STRING	EFJ20332	7e-93	(Selaginella moellendorffii)
STRING	EFJ28309	7e-93	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	7e-68	NAC family protein

Link Out ? help Back to Top
Phytozome	71469
Entrez Gene	9646429 \| 9653437

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]