PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 69265 | ||||||||
Common Name | SELMODRAFT_49098, SELMODRAFT_69265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | B3 | ||||||||
Protein Properties | Length: 105aa MW: 12230.7 Da PI: 8.2292 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56.8 | 4e-18 | 2 | 99 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k lt+sdv+k++rlv+ k++a+e+ +++ ++++ l + d ++++W ++++y+++s++yv++kGW ++vk +L gD v F 69265 2 FSKLLTNSDVNKLNRLVIHKRHARECfpklseaakpgnpdsSIPDPNETVLFFHDHESEQWAFNFKYWGSSKTYVFSKGWIQYVKRYNLACGDEVSFF 99 889*************************999988887777755555788999*****************************************99996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.6E-27 | 1 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.26E-18 | 1 | 105 | No hit | No description |
PROSITE profile | PS50863 | 10.842 | 2 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-9 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 2 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.19E-22 | 2 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
LFSKLLTNSD VNKLNRLVIH KRHARECFPK LSEAAKPGNP DSSIPDPNET VLFFHDHESE 60 QWAFNFKYWG SSKTYVFSKG WIQYVKRYNL ACGDEVSFFR EEPSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-19 | 1 | 100 | 13 | 102 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8R334 | 5e-73 | D8R334_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ14479 | 9e-74 | (Selaginella moellendorffii) | ||||
STRING | EFJ33209 | 9e-74 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 69265 |
Entrez Gene | 9644590 | 9655373 |
Publications ? help Back to Top | |||
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