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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 69246 | ||||||||
Common Name | SELMODRAFT_450085, SmHAP3C-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NF-YB | ||||||||
Protein Properties | Length: 88aa MW: 10062.7 Da PI: 8.8994 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 125.1 | 2.7e-39 | 1 | 87 | 2 | 88 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +++dr+lPian+++imk+vlP n+k++kdak++vqecvsefi fvt+ a+d+c +ekrktingdd+l al +lGf +++e ++vy++ 69246 1 KDKDRHLPIANIGKIMKRVLPDNSKMTKDAKDLVQECVSEFICFVTGIAADRCTKEKRKTINGDDILKALQQLGFAEHAEIVRVYFE 87 689**********************************************************************************87 PP | |||||||
2 | NF-YC | 25.3 | 3.1e-08 | 3 | 72 | 17 | 85 |
NF-YC 17 knhelPlarikkilka.dedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 k+++lP+a i ki+k +d ++++ +a l+ fi +t + ++ + kr+t++ di +a+++ 69246 3 KDRHLPIANIGKIMKRvLPDNSKMTKDAKDLVQECVSEFICFVTGIAADRCTKEKRKTINGDDILKALQQ 72 789***********96269**********************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.6E-38 | 1 | 87 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.47E-30 | 4 | 86 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-25 | 6 | 70 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-12 | 34 | 52 | No hit | No description |
PRINTS | PR00615 | 1.3E-12 | 53 | 71 | No hit | No description |
PRINTS | PR00615 | 1.3E-12 | 72 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
KDKDRHLPIA NIGKIMKRVL PDNSKMTKDA KDLVQECVSE FICFVTGIAA DRCTKEKRKT 60 INGDDILKAL QQLGFAEHAE IVRVYFER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-33 | 1 | 88 | 2 | 89 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-33 | 1 | 88 | 2 | 89 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019901 | 1e-127 | Selaginella moellendorffii CCAAT-box binding factor HAP3-like protein (HAP3C1) mRNA, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002969754.1 | 3e-60 | nuclear transcription factor Y subunit B-10 | ||||
Swissprot | Q9FGJ3 | 3e-35 | NFYB2_ARATH; Nuclear transcription factor Y subunit B-2 | ||||
Swissprot | Q9SLG0 | 1e-35 | NFYB1_ARATH; Nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | D8RFJ7 | 6e-59 | D8RFJ7_SELML; CCAAT-box binding factor HAP3 | ||||
STRING | EFJ28878 | 1e-59 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP168 | 17 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38880.6 | 4e-38 | nuclear factor Y, subunit B1 |
Link Out ? help Back to Top | |
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Phytozome | 69246 |
Entrez Gene | 9645381 |
Publications ? help Back to Top | |||
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