PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 68039
Common NameSELMODRAFT_68039
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Trihelix
Protein Properties Length: 222aa    MW: 24795.2 Da    PI: 10.5252
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
68039genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.91.9e-169100286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               Wt+  +laLi+a  e+  +l+rg+lk+++W+ev++ +         +++   +s +qCk++++ l+k+yk +k++  +  ++s s++p+f +l+
     68039   9 WTEGATLALIDAWGERYLHLNRGNLKQKHWREVADEVtkrscldesSSGRSGKSDVQCKNRLDTLKKKYKIEKARLAS--EGSPSKWPFFVKLD 100
               *******************************************99877778899***********************9..688889****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-257102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
PGHGRDDAWT EGATLALIDA WGERYLHLNR GNLKQKHWRE VADEVTKRSC LDESSSGRSG  60
KSDVQCKNRL DTLKKKYKIE KARLASEGSP SKWPFFVKLD ELIGPSKKGK KRSTPPPSNN  120
GIAPAAAAAA ALTATPNNGN ATAANEGRAS SSKRRKVEGS FKDLARAIIK FGEVYERIES  180
AKQQQLMDLE RQRMEFTKDL ELQRMQLFMQ TQVELAKMKH GK
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531829.11e-145trihelix transcription factor ASIL2-like
SwissprotQ9LJG84e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLD8RJB41e-163D8RJB4_SELML; Uncharacterized protein (Fragment)
STRINGEFJ278841e-164(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.12e-45sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]