![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678468684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 217aa MW: 23795.3 Da PI: 8.3285 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.9 | 3.2e-28 | 4 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+ +C l ++ p++q++++ +++k++G++ +l+l++a++ e+r+++++sl+yeA+ r+ +Pv Gavg+++++++ l+q++++++ 678468684 4 SCNGCRVLRKACSGSCLLKTCLqwipsPESQANATVFLAKFYGRAGLLNLISAASLEHRQETFRSLLYEACGRVINPVDGAVGLLTSGNWALCQAAVDAV 103 6************************9999********************************************************************999 PP DUF260 96 llkee 100 l++++ 678468684 104 LQGSP 108 88765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.803 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-22 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MRMSCNGCRV LRKACSGSCL LKTCLQWIPS PESQANATVF LAKFYGRAGL LNLISAASLE 60 HRQETFRSLL YEACGRVINP VDGAVGLLTS GNWALCQAAV DAVLQGSPIT AKFTGEERSF 120 NCDAKEGHPF PYGDIRRMNK VPSELHPVRI RNHFKLTPEV KKFTITEWGP KGEELCSSLR 180 SQIKRVPSSD DSFSVETVEP SLLNPSSPPT LELTLGP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678468684 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027100762.1 | 6e-70 | LOB domain-containing protein 40-like | ||||
Refseq | XP_027154651.1 | 6e-70 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9ZW96 | 4e-52 | LBD40_ARATH; LOB domain-containing protein 40 | ||||
TrEMBL | A0A068TWE6 | 4e-67 | A0A068TWE6_COFCA; Uncharacterized protein | ||||
STRING | Migut.E00341.1.p | 1e-64 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67100.1 | 1e-54 | LOB domain-containing protein 40 |