PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678468063

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 369aa MW: 41209.7 Da PI: 9.4464

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678468063	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.3	1.3e-15	62	152	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Li+a + +l+rg+l++++W++vs+++ + +++r+ +qCk++++ ++k+yk +k + + + st+p+f+ l+ 678468063 62 CWSEDATRTLIDAWGSHYLQLNRGNLRQKHWQAVSDAVnarhaATAKLKRTDVQCKNRIDTIKKKYKIEKSKVAQSSGRYISTWPHFQILD 152 7***********************************999999999***********************99999******9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.6E-25	60	153	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MSSRALATPS STESASPSPE RRISGEGKVA PSPPESPPEN DVSPEEQPAS VRNPGFPNRE 60 DCWSEDATRT LIDAWGSHYL QLNRGNLRQK HWQAVSDAVN ARHAATAKLK RTDVQCKNRI 120 DTIKKKYKIE KSKVAQSSGR YISTWPHFQI LDSFIGHSFS KVNGNTADAN GHSGKLRRRD 180 SSSSEKSSSP STVDRHGPKS PISNHRRKDP VANHLPHWSV PVGPRSKRAG PGIVTERNFS 240 VMAAAAAAME AEEEDEYYDD GEENEEEEHN SSSWRRPPTL PPATSSGMKR SRPSHEEGSS 300 VGEGYAKLAE SISKLAQIYE KVEEAKQRQM VEMEKQRIQF TKDLELQRMQ MFVECQVRLE 360 KLKRAKPSS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MSSRALATPS STESASPSPE RRISGEGKVA PSPPESPPEN DVSPEEQPAS VRNPGFPNRE  60
DCWSEDATRT LIDAWGSHYL QLNRGNLRQK HWQAVSDAVN ARHAATAKLK RTDVQCKNRI  120
DTIKKKYKIE KSKVAQSSGR YISTWPHFQI LDSFIGHSFS KVNGNTADAN GHSGKLRRRD  180
SSSSEKSSSP STVDRHGPKS PISNHRRKDP VANHLPHWSV PVGPRSKRAG PGIVTERNFS  240
VMAAAAAAME AEEEDEYYDD GEENEEEEHN SSSWRRPPTL PPATSSGMKR SRPSHEEGSS  300
VGEGYAKLAE SISKLAQIYE KVEEAKQRQM VEMEKQRIQF TKDLELQRMQ MFVECQVRLE  360
KLKRAKPSS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678468063

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020550151.1	1e-114	trihelix transcription factor ASIL2
TrEMBL	A0A2G9GJL1	1e-108	A0A2G9GJL1_9LAMI; Transcription factor GT-2
STRING	Migut.M00262.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-33	sequence-specific DNA binding transcription factors