PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678467900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | B3 | ||||||||
Protein Properties | Length: 252aa MW: 28100.3 Da PI: 9.227 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 92.9 | 2.3e-29 | 35 | 138 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 f+kv tpsdv+k++rlv+pk++a+++ + ++ l++ed g++W+++++y+ +s++yv+tkGW++Fvk++gL++gD+v F + + +++e + 678467900 35 FDKVVTPSDVGKLNRLVIPKQHAQKYfpldvsT--SDKGHLLSFEDGCGKKWRFRYSYWSSSQSYVMTKGWNRFVKEKGLDAGDVVSFGRGVDeMGKEIL 132 89**************************99643..446779************************************************77555888877 PP EEEE-S CS B3 94 vkvfrk 99 + +r+ 678467900 133 FIGCRR 138 777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 29 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-29 | 30 | 133 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.64E-19 | 33 | 120 | No hit | No description |
Pfam | PF02362 | 1.8E-26 | 35 | 138 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-20 | 35 | 139 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.254 | 35 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MPSPSSSPPQ LSDNRVADTQ LRSGGGVVSS REHMFDKVVT PSDVGKLNRL VIPKQHAQKY 60 FPLDVSTSDK GHLLSFEDGC GKKWRFRYSY WSSSQSYVMT KGWNRFVKEK GLDAGDVVSF 120 GRGVDEMGKE ILFIGCRRRA SEPQMPVYTF SLSPMLRPWS PLVLHQPWMF TNSGVLCGPS 180 GMQPVVLNSV PLVQREAAVK KRVRLFGVDF ECPLPEPCPT LPLLHQLPSP GSDSVRFDLW 240 KGKDSISSDV DI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-52 | 28 | 139 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-52 | 28 | 139 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678467900 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009391640.1 | 3e-65 | PREDICTED: B3 domain-containing protein Os03g0120900-like | ||||
Refseq | XP_012439872.1 | 7e-65 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_012439873.1 | 7e-65 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 6e-56 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
Swissprot | Q9M268 | 4e-56 | NGA2_ARATH; B3 domain-containing transcription factor NGA2 | ||||
TrEMBL | A0A068UVI6 | 3e-67 | A0A068UVI6_COFCA; Uncharacterized protein | ||||
STRING | Gorai.008G261100.1 | 3e-64 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2817 | 23 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 5e-56 | B3 family protein |