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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678467412 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | AP2 | ||||||||
Protein Properties | Length: 423aa MW: 45671.8 Da PI: 8.7543 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.7 | 1.1e-16 | 138 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g 678467412 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 187 78*******************......55**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-8 | 138 | 187 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.89E-16 | 138 | 197 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.26E-11 | 139 | 197 | No hit | No description |
PROSITE profile | PS51032 | 17.714 | 139 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-32 | 139 | 201 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-17 | 139 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MLDLNMDAFE VGFASDDDPE STPTAGSVVS TTTSNNVGKD EVNCNCSSSS LVTLNFSSNF 60 GKNGTVHIDD EAGDNVNELQ LFPTSPSAVP GFRTNYRLDL SSPEAARGVQ LGLYKTKLPV 120 DNPPQPKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR 180 AAVKFRGVDA DINFNVSDYE EDMKQMVNFT KEEFVHILRR QSSGFPRGSN KHRIAALQKP 240 DLREAGKAQV LGNRGYDKAA IQCNWREPVT GFESSKQTRE LSFAWRDGGC GSSIDLSLGI 300 SLPSNGSQGN GAARALRRPL PSGEMAYGQS HKAEAIPAQR SLMSTEYPQS WPGIFSGLPQ 360 TQRLAAKPSF EGCNSAGLPS PPWKPVSHVA VPPTPTLPSA ASSGFSSSTA PAPPSTSISA 420 FLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678467412 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102158.1 | 4e-94 | ethylene-responsive transcription factor RAP2-7 isoform X1 | ||||
Swissprot | Q9SK03 | 3e-62 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A0G2SJH4 | 2e-98 | A0A0G2SJH4_SALMI; AP10/EREBP Transcription Factors | ||||
STRING | Migut.F02018.1.p | 1e-83 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.2 | 4e-58 | related to AP2.7 |