PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678467282 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 733aa MW: 79229.5 Da PI: 6.2349 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 312.1 | 1.3e-95 | 374 | 732 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL+++Ae v++g+l la+ +Larl+++ sp g p+qR+a+y +eAL+ l+ s++++ + l +++++s+ + + ++ a+k fs++sP++ fs++t+Nq 678467282 374 IDLLYKAAELVEAGNLVLAHGILARLNHQLSPIGIPFQRAAFYCKEALQMLLHCSSNNVDNPLsTMTNSSPFSIIFRIGAYKSFSDISPLVHFSNFTCNQ 473 689***************************************************9****999944455555669************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 a+lea+eg +r+Hi+Dfdi +G+QW++L+q+ a R+ g+ s++iT+++sp++++ el ++e+L +fA+ + +++ f+v+ + +l++ ++++ + 678467282 474 AVLEALEGFDRIHIVDFDIAYGGQWASLIQEVAMRSPGSTSMKITAIVSPSTHDPLELGLIRENLIQFAKDVSISLTFEVMCID-----SLSSGSWSESD 568 ********************************************************************************7433.....345558999** PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 a+aVnl + ++ +++ s++ +L++vk+lsPk+v+ +++ +d+++ sF+++++++l+ ++ l++s++a +++++ +k+Er+l++++i+ +v 678467282 569 AVAVNLPV--ASVANSQFSMPL----ILRFVKQLSPKIVISTDRGCDRTDLSFANHVIHTLHSHTNLLESIDAA-NAQADALQKIERFLIQPAIERIVLS 661 *******9..556656777777....*********************************************887.5788999****************99 PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++t ++Wr+ + +aGF+pvp+s+ a++qa++++++++++g+ +e++++slvl+Wk+++Lv+ SaWr 678467282 662 RFGT---PTKTTQHWRSIFLSAGFSPVPFSNLAESQAECVIKRTPVRGFLIEKRQASLVLCWKRKELVASSAWR 732 8777...789999************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.509 | 347 | 712 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-93 | 374 | 732 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 733 aa Download sequence Send to blast |
MKGMPLPFDF EGKGVLDLDL IVKNRTFFSE SGGDLLQRSN CSGFGFGEPT SVLDSVTTPS 60 RPTSSTTLSS SLGGGGGSTG AGGGAASTDT AAKWQRDSTA TSSNAVGKVD SGGLLTVPQS 120 MEFEGAGGGN MEKFAMEDWE SVLSESAAVP PSQEQSMLRW IMGDNEDPAM GNLNKALQIS 180 TGGVFPAAEF DFSGGYTAVD QMPTLPIFLN NRSSSEKIAS LSPNSVSSNP SSSFKFSPIS 240 QAVLHPSGSL SFHHQIALDA SSDTKPPVTN SSLLVNQQSQ NPSCFFPLSY SQQQEHSIFV 300 SPPAKRQNFG GFADVGLDSA GQISKGSFMD SGHPLFLQQQ FSPQLQFLPS YIHQRHKEKP 360 KLTVRDDFGQ QATIDLLYKA AELVEAGNLV LAHGILARLN HQLSPIGIPF QRAAFYCKEA 420 LQMLLHCSSN NVDNPLSTMT NSSPFSIIFR IGAYKSFSDI SPLVHFSNFT CNQAVLEALE 480 GFDRIHIVDF DIAYGGQWAS LIQEVAMRSP GSTSMKITAI VSPSTHDPLE LGLIRENLIQ 540 FAKDVSISLT FEVMCIDSLS SGSWSESDAV AVNLPVASVA NSQFSMPLIL RFVKQLSPKI 600 VISTDRGCDR TDLSFANHVI HTLHSHTNLL ESIDAANAQA DALQKIERFL IQPAIERIVL 660 SRFGTPTKTT QHWRSIFLSA GFSPVPFSNL AESQAECVIK RTPVRGFLIE KRQASLVLCW 720 KRKELVASSA WRC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-31 | 391 | 732 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678467282 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090295.1 | 0.0 | scarecrow-like protein 6 | ||||
Swissprot | O81316 | 1e-132 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2G9GWL5 | 0.0 | A0A2G9GWL5_9LAMI; Uncharacterized protein | ||||
STRING | Solyc01g090950.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-129 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|