PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678466371

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 429aa MW: 46900.6 Da PI: 7.1329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466371	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.6	2.6e-09	288	335	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq 678466371 288 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 335 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.31E-10	282	339	No hit	No description
SuperFamily	SSF47459	6.94E-17	282	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-16	284	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	284	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-6	288	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	290	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009637	Biological Process	response to blue light
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MDKAYFTEGG ISSNPLHLEA GPWNGGEESY LDEGLSVVEQ FSHFDSSFSS GISPSPLGND 60 AFLLPEIMGK EQGLGNQFVG GNDDSVKMNL PPLALPSPSR GSGFVERAPK YSLLGSRSFK 120 GRSVNNVELG QRSLIPMLGS AKLSRVCSTP ALGHGGSPPG KHISTQIRRG SGIVSASDGK 180 SGKIPRLISN DVSSVSEQMQ SAENGPKVSN EMNSKDRRAC KRDEDGTPSF KCQDGGDLKR 240 LKPEETQISP EEEPKRDCSE KQKTAPKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI 300 SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLASVNP GLDFNSENRV 360 AKEVIYPSNS PPLHHHHHHH HPQFHQTSPP PLDSFTHPLP PTVPSFNEDD LQSIVLMGFA 420 QDPALHPPQ

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MDKAYFTEGG ISSNPLHLEA GPWNGGEESY LDEGLSVVEQ FSHFDSSFSS GISPSPLGND  60
AFLLPEIMGK EQGLGNQFVG GNDDSVKMNL PPLALPSPSR GSGFVERAPK YSLLGSRSFK  120
GRSVNNVELG QRSLIPMLGS AKLSRVCSTP ALGHGGSPPG KHISTQIRRG SGIVSASDGK  180
SGKIPRLISN DVSSVSEQMQ SAENGPKVSN EMNSKDRRAC KRDEDGTPSF KCQDGGDLKR  240
LKPEETQISP EEEPKRDCSE KQKTAPKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI  300
SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLASVNP GLDFNSENRV  360
AKEVIYPSNS PPLHHHHHHH HPQFHQTSPP PLDSFTHPLP PTVPSFNEDD LQSIVLMGFA  420
QDPALHPPQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250\|UniProtKB:Q8GY61, ECO:0000269\|PubMed:24130508}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00036	PBM	Transfer from AT5G48560	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466371

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089038.1	1e-111	transcription factor bHLH62 isoform X2
Swissprot	Q9FJL4	2e-64	BH078_ARATH; Transcription factor bHLH78
TrEMBL	A0A2G9GX75	1e-107	A0A2G9GX75_9LAMI; Uncharacterized protein
STRING	POPTR_0002s24990.1	2e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	1e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]