PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678466143

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 428aa MW: 48949.5 Da PI: 7.6816

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678466143	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	186	209	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++++Lk+H + H 678466143 186 YICSVCGRKCKTHMDLKKHFQQlH 209 89*****************76655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	6.9E-8	106	176	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.658	186	214	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	188	209	IPR007087	Zinc finger, C2H2
CDD	cd06167	2.13E-11	215	340	No hit	No description
Gene3D	G3DSA:3.40.50.1010	6.9E-8	271	338	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MIILPSRKYP TEQSPQSHLY PPLGLLVQVT GVGRKPPEMV ATINLIERLN LNTRFLFSSS 60 ARPHKSFATS LHFDSNPRRR FFPVKSCASH GEIDMVRTKE GVYAPKEKRV VILWDLDNKP 120 PRGPPYDAAI ALKSVAQKFG SVIDISAYAN RHAFIHIPQW VVEERRERRQ IDLLERKELV 180 SSPQPYICSV CGRKCKTHMD LKKHFQQLHE RERQKKLGRM RSLKGKKRQR FKERFIDGNE 240 KYNEAARSLL TPKVGYGLAQ ELKRAGVFVK TVQDKPQAAD WALKRQILHS MSSGVDWIVL 300 VSDDSDFSEM LNKARDANIG TVVVGDQDRS LGRFADVWIP WIKVENRDVK DSDLEMRMAD 360 STDDVHGGFT VSFFDGDTEF RGSDIRFSGS SLSGEYDEDD DWITATLTEE EEMGDGDFLL 420 DSEDESWL

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MIILPSRKYP TEQSPQSHLY PPLGLLVQVT GVGRKPPEMV ATINLIERLN LNTRFLFSSS  60
ARPHKSFATS LHFDSNPRRR FFPVKSCASH GEIDMVRTKE GVYAPKEKRV VILWDLDNKP  120
PRGPPYDAAI ALKSVAQKFG SVIDISAYAN RHAFIHIPQW VVEERRERRQ IDLLERKELV  180
SSPQPYICSV CGRKCKTHMD LKKHFQQLHE RERQKKLGRM RSLKGKKRQR FKERFIDGNE  240
KYNEAARSLL TPKVGYGLAQ ELKRAGVFVK TVQDKPQAAD WALKRQILHS MSSGVDWIVL  300
VSDDSDFSEM LNKARDANIG TVVVGDQDRS LGRFADVWIP WIKVENRDVK DSDLEMRMAD  360
STDDVHGGFT VSFFDGDTEF RGSDIRFSGS SLSGEYDEDD DWITATLTEE EEMGDGDFLL  420
DSEDESWL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678466143

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011069738.1	1e-176	uncharacterized protein LOC105155542
TrEMBL	A0A2G9GXZ9	1e-177	A0A2G9GXZ9_9LAMI; Uncharacterized protein
STRING	Migut.C00545.1.p	1e-167	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12268	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-148	C2H2-like zinc finger protein