PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678465474

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 419aa MW: 45402.4 Da PI: 9.5084

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678465474	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	96	155	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ l+cprC+s +tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++ 678465474 96 PERVLTCPRCNSVDTKFCYYNNYNTNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSA 155 678899***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-27	93	153	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	98	154	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.463	100	154	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	102	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MKRGVSAGCP KPLNWWRNVC VLRLGQASLR LSFAFFQLHC SKRRTVWLQE LKGTNLATRL 60 TEDPNGPFAG NSDVQASKTE EQIDPGVSQE KSFRKPERVL TCPRCNSVDT KFCYYNNYNT 120 NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKSAAVGQL RPAVPEALPK VSVEHSTGVH 180 HHPGPNTNAT ALKLSSDAPP LCNVFSRTGE QESCVSLGSK ECGHDPSTGS SIASPNDVIG 240 KRRLQEQVSS CHPFPSWPYP CHSAQWHSLA SAPTFAFGSV PMPSSYSSAT QLMGSKIPSL 300 WTGPWVSPGP WVSPPAPMAP WSGASSMTLG KHSRDDITAN FGEEIPSKNT LEQRLCVPKA 360 SKLGIEEDGA DSVGICSSSL LKSFKGESKN KGALHMKSSS VLQANTAALS MALSFRESS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MKRGVSAGCP KPLNWWRNVC VLRLGQASLR LSFAFFQLHC SKRRTVWLQE LKGTNLATRL  60
TEDPNGPFAG NSDVQASKTE EQIDPGVSQE KSFRKPERVL TCPRCNSVDT KFCYYNNYNT  120
NQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KNKSAAVGQL RPAVPEALPK VSVEHSTGVH  180
HHPGPNTNAT ALKLSSDAPP LCNVFSRTGE QESCVSLGSK ECGHDPSTGS SIASPNDVIG  240
KRRLQEQVSS CHPFPSWPYP CHSAQWHSLA SAPTFAFGSV PMPSSYSSAT QLMGSKIPSL  300
WTGPWVSPGP WVSPPAPMAP WSGASSMTLG KHSRDDITAN FGEEIPSKNT LEQRLCVPKA  360
SKLGIEEDGA DSVGICSSSL LKSFKGESKN KGALHMKSSS VLQANTAALS MALSFRESS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678465474

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098639.1	1e-83	cyclic dof factor 2-like
TrEMBL	A0A2G9GHS2	9e-78	A0A2G9GHS2_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-48	cycling DOF factor 2