PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678465297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 741aa MW: 79575 Da PI: 6.2519 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 317.9 | 2.1e-97 | 376 | 740 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +L ++Ae +++g+l+la+ +Larl+++ sp g+p+ R+a++ +eAL+ l+ ++++l + +++ ++ + +++ a+k fse+sP+++f+++t NqaI 678465297 376 AQLHKAAELLHTGNLALAHGILARLNHQLSPIGKPFCRAAFHCKEALQLLLHCTSNKLN-IPYSTALPHLTLFSKIGAYKSFSEISPLVQFANFTSNQAI 474 6899***********************************************99555555.44455555577999************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.... 198 ea+eg++r+ iiDfdi++G+QW++L+q+La R +g+ps++iT+++sp ++++ el+ t+e+L +fA+e+++++ef+++ ++++l+ +L + p 678465297 475 IEALEGSDRIRIIDFDIGYGGQWASLMQELALRIGGAPSIKITALVSPMTHDQLELSLTRENLIQFAREINISLEFDLV---SIDSLSSGSLLMPPhape 571 ******************************************************************************8...666777777755545557 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreiv 295 +Ea+aVnl + +l++ + sl+ vL++vk+lsP++vv +++ +d+++ sF++ +++al+ y++l++sl+a +++++ + + +Er+ll++ i+ 678465297 572 NEAIAVNLPAA--SLVNYQFSLPL----VLRFVKQLSPRIVVSMDRGCDRTDLSFANVVTHALQSYTSLMESLDAAAAAANvpvDSIQRIERFLLQPGIE 665 ********995..55544666666....*********************************************9998888889899999*********** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + ++ e++++Wr+++ +aGF+pv++s++a +qa++++++ ++ g++ve+++ slvl+W++++L+s+SaWr 678465297 666 MLILGRFRA----PEKMQHWRSMFLSAGFSPVTFSHFADAQAECIIKRASVGGFQVEKRQSSLVLCWQRKELISASAWR 740 ***998887....9****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.912 | 348 | 720 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.4E-95 | 376 | 740 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
EPTSVLDSVT TPSQLTSSST LSSSLGGGGG GGGGGGGAAS TDSAGVALVS EADPSSKWQQ 60 QDSTTATSTN AGGPGSGHLP IAASLVIEDA VAGSGEHPQR FAMEDWDTVF SESAAVSPSQ 120 EQSILRWFMG DVEDPAVANL NKVLQIGGGG GGGSIMPPAE FDFSGVYGSV DQGFAANHVS 180 ASFMPTLPVF PNNNRSSAEK LGFLPNSTPP NLKLSPNSHS LLCSSPDFNN LGSMAFKHQT 240 PFDSSVEIKP HIFNSGVLMN QQSQNTSFFF PLSYAPQQGQ SSIFHPPQAK RQIAGGLCDG 300 GPHTVGQISK GPFVDTGQHE LCMGRMPLGL QQQVPHQLQF PPNYLPQRPM TEEQKPNFVP 360 LNDLENCHQQ QQSTIAQLHK AAELLHTGNL ALAHGILARL NHQLSPIGKP FCRAAFHCKE 420 ALQLLLHCTS NKLNIPYSTA LPHLTLFSKI GAYKSFSEIS PLVQFANFTS NQAIIEALEG 480 SDRIRIIDFD IGYGGQWASL MQELALRIGG APSIKITALV SPMTHDQLEL SLTRENLIQF 540 AREINISLEF DLVSIDSLSS GSLLMPPHAP ENEAIAVNLP AASLVNYQFS LPLVLRFVKQ 600 LSPRIVVSMD RGCDRTDLSF ANVVTHALQS YTSLMESLDA AAAAANVPVD SIQRIERFLL 660 QPGIEMLILG RFRAPEKMQH WRSMFLSAGF SPVTFSHFAD AQAECIIKRA SVGGFQVEKR 720 QSSLVLCWQR KELISASAWR G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 5e-31 | 380 | 739 | 24 | 377 | Protein SCARECROW |
5b3h_D | 5e-31 | 380 | 739 | 24 | 377 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678465297 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090295.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A2G9GWL5 | 0.0 | A0A2G9GWL5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01597.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-128 | GRAS family protein |