PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678464786

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 354aa MW: 40823.8 Da PI: 7.1696

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678464786	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.4	4.3e-14	80	137	1	58
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenln 58 +W +qe+++ ie+r ++e +++ g+ +k lWe v+++mrerg r+++qC+ kw+ l+ 678464786 80 EWGNQEIRDFIEIRAQLEWNFSVGNNNKDLWETVANRMRERGHLRTAEQCRWKWKCLK 137 5*****************************************************9775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-11	79	138	No hit	No description
PROSITE profile	PS50090	6.319	81	137	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MYRSSGNVSG HLSSPGSSGG GGGAATPRSS GGNRYPLQHP QVYQPVMVPV PPPPAPPSQM 60 FFSASRGGGD YSDFPFSDAE WGNQEIRDFI EIRAQLEWNF SVGNNNKDLW ETVANRMRER 120 GHLRTAEQCR WKWKCLKVMT CKHVTEGSLT IQEQEVSNLG DDQQSLFYDE MHSVSSVQTT 180 RMVQQHALES EMVRMRDEKR AKKSCGDEWN QECSLEHEDA IAAEATVPRK KTKKEKQPKS 240 VENEIYLTPT PVSASNGGYF IKSVKEIMRK FIQQQQNIDM QWRKRMEKQA EERELFEREW 300 RQKMENLENE KLKMERTQSE YDEQRRVRVE IRAEKADALL TALLKNLIKD EIQS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MYRSSGNVSG HLSSPGSSGG GGGAATPRSS GGNRYPLQHP QVYQPVMVPV PPPPAPPSQM  60
FFSASRGGGD YSDFPFSDAE WGNQEIRDFI EIRAQLEWNF SVGNNNKDLW ETVANRMRER  120
GHLRTAEQCR WKWKCLKVMT CKHVTEGSLT IQEQEVSNLG DDQQSLFYDE MHSVSSVQTT  180
RMVQQHALES EMVRMRDEKR AKKSCGDEWN QECSLEHEDA IAAEATVPRK KTKKEKQPKS  240
VENEIYLTPT PVSASNGGYF IKSVKEIMRK FIQQQQNIDM QWRKRMEKQA EERELFEREW  300
RQKMENLENE KLKMERTQSE YDEQRRVRVE IRAEKADALL TALLKNLIKD EIQS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678464786

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10133	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	8e-15	Trihelix family protein