PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678464673
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 207aa    MW: 23155.6 Da    PI: 9.8638
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678464673genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-144589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r++++++E +ll++++k+lG++ W++Ia +++ gRt++++k+ w+++
        678464673 45 RNPFSEDEVDLLIRLHKLLGNK-WTLIAGRLP-GRTANDVKNLWNSH 89
                     789*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.41E-202597IPR009057Homeodomain-like
PROSITE profilePS500904.0542539IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-92550IPR009057Homeodomain-like
PROSITE profilePS5129422.494094IPR017930Myb domain
SMARTSM007176.9E-134492IPR001005SANT/Myb domain
PfamPF002492.3E-134589IPR001005SANT/Myb domain
CDDcd001674.21E-114790No hitNo description
Gene3DG3DSA:1.10.10.602.1E-185194IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEDPYPTGHV QHGLYGCPLL CPGLNRCRKS CRLRWLNYLR PELNRNPFSE DEVDLLIRLH  60
KLLGNKWTLI AGRLPGRTAN DVKNLWNSHV KKKVTAPSDS THKNVGAAAD TKTPQTIILH  120
RPKPIRLYPR TSSHKATAGK TRFAPLSPVD TPPSPSFGYM FDDRAGRTLN FPVPSGELFA  180
EPPDATAIPK LMAVDDLDFL HQLFEAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-17119424108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678464673
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019427402.12e-40PREDICTED: transcription factor MYB114-like
RefseqXP_022854211.14e-40transcription factor MYB114-like
SwissprotQ9FNV95e-35MY113_ARATH; Transcription factor MYB113
TrEMBLQ1HAY16e-39Q1HAY1_IPONI; R2R3-MYB transcriptional regulator
STRINGXP_009605381.17e-39(Nicotiana tomentosiformis)
STRINGXP_009627993.16e-39(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-36myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]