PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678464228 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 558aa MW: 63419.6 Da PI: 5.1966 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 368.2 | 1.1e-112 | 180 | 555 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL ++A+avs ++ +a++lL ++ ++sp+gd ++Rla+yf++AL ar+ +++s ly a ++s +++++ ++ l+ ++++++++P+ ++s+++aN++ 678464228 180 KTLLSQAAKAVSVLNNGAARELLMGIRRHSSPYGDHTERLAHYFANALDARIEGTGSMLYTAAASSLSRSSQPAQILKCYQAYFQACPFQRLSNIVANKT 279 57999*********************************************************************************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I + +++++HiiDf+i++G+QWp+L+q ++ +p+gpp l+iTg++ p++g + ++e++g+ L +++++++vpfe+++ +ak++++++le+L ++++ 678464228 280 IALYTREAQKIHIIDFGIMYGFQWPCLIQGISLKPGGPPLLKITGIDLPQAGlkPAARVERVGRWLMSYCKRFDVPFEYHP-IAKKWKEIKLEDLGIEED 378 ***************************************************9999**************************.7***************** PP GRAS 200 EalaVnlvlqlhrlldesvsl..eserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 E+++Vn+v+q++++l+es+sl es+rd+vLkl++++ P+++v+ ++a+h+ + F +rf eal++ys lfd+lea++pre++er+++Er +lg ei+nv 678464228 379 EVVVVNSVYQMKHVLEESMSLdlESPRDSVLKLIREIYPTIFVHGISNANHGVPLFTTRFGEALNHYSCLFDMLEATMPREDNERQVYERDILGSEIMNV 478 ****************987751167*************************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+ceg+er+er e ++kW+ r ++aGF+++pl++++ ++ak+ +r + + vee+ +++++gWk+r ++++S+W+ 678464228 479 VTCEGSERVERPEGYKKWQVRDNRAGFEQLPLDKQILQEAKTKVRLWYHPDFLVEEDGKWMLQGWKGRVVYALSFWK 555 ************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.961 | 153 | 535 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-110 | 180 | 555 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MVACDYFNGV FEYIEKILME EDDDADNLGA FSSCIEKTFY DLLDSQAQDE AAGTGRIDGD 60 GDSGQGHPFP GGESQGKGRR RRDDEENEDD DDQERRRKQI AAGDDDDECE PTDKYDKTLL 120 CQKMNPCFYE TSTACTGNNQ DSSEDENVSR KYIKPPELKR GRPKKGSKKQ SGVKEIIDFK 180 TLLSQAAKAV SVLNNGAARE LLMGIRRHSS PYGDHTERLA HYFANALDAR IEGTGSMLYT 240 AAASSLSRSS QPAQILKCYQ AYFQACPFQR LSNIVANKTI ALYTREAQKI HIIDFGIMYG 300 FQWPCLIQGI SLKPGGPPLL KITGIDLPQA GLKPAARVER VGRWLMSYCK RFDVPFEYHP 360 IAKKWKEIKL EDLGIEEDEV VVVNSVYQMK HVLEESMSLD LESPRDSVLK LIREIYPTIF 420 VHGISNANHG VPLFTTRFGE ALNHYSCLFD MLEATMPRED NERQVYERDI LGSEIMNVVT 480 CEGSERVERP EGYKKWQVRD NRAGFEQLPL DKQILQEAKT KVRLWYHPDF LVEEDGKWML 540 QGWKGRVVYA LSFWKPTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-52 | 179 | 555 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 97 | RRRDDEENEDDDDQERRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678464228 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022874865.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2G9I6C2 | 0.0 | A0A2G9I6C2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02077.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-146 | SCARECROW-like 14 |