PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 323aa MW: 35690.3 Da PI: 8.0214

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678463176	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105.7	2.4e-33	149	207	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCts+ C vkk+ver++ dp++v++tYeg+H+h+ 678463176 149 LDDGYRWRKYGQKAVKNSPFPRSYYRCTSTACGVKKRVERASADPSIVVTTYEGTHKHP 207 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-34	134	209	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-28	141	209	IPR003657	WRKY domain
PROSITE profile	PS50811	31.766	144	209	IPR003657	WRKY domain
SMART	SM00774	4.5E-38	149	208	IPR003657	WRKY domain
Pfam	PF03106	9.7E-27	150	207	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEENSRKSYC WEKGGGGDGG FVGEECTSSL GFVDMLLSRH RRSHSGFSFR IFDDDEDLPL 60 LPPATAVAPA DKSELVNARN SPPTPNSSSI STEAPPPLPS TAYNRGDQPA RHGELKMGEN 120 AADMKKTKKR KREREPRFAF MTKTEIDHLD DGYRWRKYGQ KAVKNSPFPR SYYRCTSTAC 180 GVKKRVERAS ADPSIVVTTY EGTHKHPCPV TLSTTFGIPS DIPVAVGDIL PFDLLFHSSP 240 DPLHHRPVFS TNVVPVPPPL SSCATNTTST CPVLPSFPLT RDKKPFFCSS PSSSFRDHGL 300 LQDMLPPQIL LLQDDSKDKL ELV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-28	139	210	7	78	Probable WRKY transcription factor 4
2lex_A	2e-28	139	210	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678463176

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9FGZ4	4e-42	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A2G9I0G1	2e-59	A0A2G9I0G1_9LAMI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-42	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]