PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678463089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 574aa MW: 63177.6 Da PI: 7.1805 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 269.4 | 1.2e-82 | 221 | 574 | 6 | 374 |
GRAS 6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105 +++A a+s+g+l +a ++ +rl + +p + la y++ A + r + + ++++++e ++++++ vsP++k+++++aN aIlea 678463089 221 IDAAVAISEGKLDAAAEIFSRLLQ------EPKRSLAGYMVSAFKFRGS------------FNFPSMTMEEYSVSTQMLYCVSPCFKLGFMAANLAILEA 302 555666666666666666655544......3445556666666555543............3444455788888999*********************** PP GRAS 106 vege....ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 ++ e +++H++Df+++qG+Q++ Ll+aLa+ + g+ sl iT++ + + +e+l+++ge L+ + +++g+++ f++ ++ +++ e+L+++++Ea 678463089 303 ASVEnlcfQKIHVLDFELGQGGQYVHLLHALAAAETGSKSLVITAFTY-TGVGEEKLKAVGEGLKAVSQKVGISLVFHA-RDFNIGAISREKLEINSDEA 400 *99989999***************************************.5569*************************9.677***************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 l Vn++++lh+l+desvs+e+ rd +L+ vk+lsP vv+vveqe+++n++++ +r+ +a +yy+al++sl++++++es +r + + +gr+i n va e 678463089 401 LTVNFAFKLHKLPDESVSVENIRDGLLRRVKTLSPAVVTVVEQELNTNTAPLTTRVRDAYDYYAALMESLDSTISPESPDRERILDA-IGRRIYNSVASE 499 *********************************************************************************999999.9*********** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 g+er+er+e ++kWr+r+++aGF+p+ l+ +aa++ ++ l++ + g++v e+ g + +gW++++L+++SaWr 678463089 500 GRERVERCEVFGKWRSRMSMAGFQPLVLNPRAANSLRAKLNTGTrvNPGFTVGEDAGGISFGWRGKTLTVASAWR 574 ************************************999987665789**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 36.072 | 183 | 552 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.1E-80 | 221 | 574 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MSSGGPPDFY SSATRSAAAS SLLPTVASPV YNPFLAQEHH HLPLQSPMMG QDSRAQIRLP 60 EFLGRRSLLD IQQNPQAVGF YLRNAKKMRP HYEISPQTLS QHTPLPPEFS NPRYGIPILR 120 QQRPHDFTSS NANLNGQFTS TEETQKSLMN HRLQELEKEL LKDEEEDESV SVVTNTELSV 180 AIRNLIDPAQ NTISPSPTSP SSSSSSASVT QPYPCHKQAV IDAAVAISEG KLDAAAEIFS 240 RLLQEPKRSL AGYMVSAFKF RGSFNFPSMT MEEYSVSTQM LYCVSPCFKL GFMAANLAIL 300 EAASVENLCF QKIHVLDFEL GQGGQYVHLL HALAAAETGS KSLVITAFTY TGVGEEKLKA 360 VGEGLKAVSQ KVGISLVFHA RDFNIGAISR EKLEINSDEA LTVNFAFKLH KLPDESVSVE 420 NIRDGLLRRV KTLSPAVVTV VEQELNTNTA PLTTRVRDAY DYYAALMESL DSTISPESPD 480 RERILDAIGR RIYNSVASEG RERVERCEVF GKWRSRMSMA GFQPLVLNPR AANSLRAKLN 540 TGTRVNPGFT VGEDAGGISF GWRGKTLTVA SAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-30 | 215 | 574 | 11 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678463089 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076123.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | S8EMR1 | 0.0 | S8EMR1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.F01094.1.p | 1e-176 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-111 | SCARECROW-like 8 |