![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678462202 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 432aa MW: 46986.2 Da PI: 6.7183 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.1 | 1.6e-16 | 144 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ ++g 678462202 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIMFRG 193 78*******************......55*********************988775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-15 | 144 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.0E-9 | 144 | 193 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.24E-11 | 145 | 203 | No hit | No description |
SMART | SM00380 | 1.3E-31 | 145 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-17 | 145 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.372 | 145 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 432 aa Download sequence Send to blast |
MLDLNVDAAG EVDFAFQGGK TPTATDSVGS TTTSAAVDEL DCNTSLFTLN FSILGKDAIH 60 IDDDVNNEEN VDDNVSEELQ LFPTAPSSAS ATAQYWLNLS AAPEFSSGGG VELGIYKTHL 120 PMSSNQVPQP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA 180 ARAYDRAAIM FRGVDADINF NTSDYEEDMK QMKNFTKEEL VHLLRRQSTG FPRGNSKYRG 240 SASLPKCNQW QLLEKKAYEK SIAQRNENEA IPVANLEPSI YTREVNFGRR DAGSGSSLDL 300 NLGISVSSDS SQGNGFAAVK TLQFPSSTMP ANQNLQGEPK YHAASWGAIF PGFSTNTKDK 360 SAAVKTSVEA GYSAGTQMWP WKMQSQGVVP LHAVPISPSA ASSGFAHAVS PCLSSLLTCK 420 QRPQFPSFQS LP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678462202 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077024.1 | 1e-112 | AP2-like ethylene-responsive transcription factor TOE3 isoform X2 | ||||
TrEMBL | A0A2Z7AQW5 | 1e-109 | A0A2Z7AQW5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.F02018.1.p | 1e-101 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.1 | 4e-65 | related to AP2.7 |