PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678460771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | GRAS | ||||||||
Protein Properties | Length: 566aa MW: 62472.9 Da PI: 5.3521 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 403.7 | 1.8e-123 | 204 | 561 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 lv++L++cAeav++++l+la+al++ + la +++ +m+++a +f eAL +r+ + +p++ + + s + + ++ f++++P+lkf+h+taNq 678460771 204 LVHTLMACAEAVQQEKLKLAEALVNSIGVLAVSQAGAMRKVALCFQEALGRRIRK---------APTNLP--DFSINYKLQNHFYDACPYLKFAHFTANQ 292 689***************************************************9.........333333..35556667777***************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 aI ea++g+++vH+iDf+i+qG+QWp LlqaLa+ p+g+p ++R+Tg+g+pe +++ l+++g +L+++A+e++v f+++ +v+k+l+dl+ ++L +++g 678460771 293 AIFEAFAGKKHVHVIDFSINQGIQWPLLLQALATSPRGAPqTFRLTGIGPPE--QSDDLQQVGLNLSHLAKEMNVAFDYRKIVVKSLADLDASMLCIREG 390 **********************************99777769********88..********************************************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E++aVn+++ lh++l++++++++ vL+lv++l+P++++vveqea+hn+ F +rf+ al+yysalfdsle++ ++ s++++ +++ +lg++i+nvva 678460771 391 ETVAVNSIFDLHQMLARPGAIDK----VLHLVRELRPQIFTVVEQEASHNDDFFYDRFTGALHYYSALFDSLESGGSSISDKDKAMSELYLGQQICNVVA 486 ***************99999988....************************************************99999******************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 cega+r erhetl +W +r+ +aGF pv+l++++ kqa ++l+ +++gy+v+e +g+l lgW++ pL+++SaWr 678460771 487 CEGADRLERHETLVQWMNRFVSAGFDPVHLGSNVHKQAMMILAYSGGNGYTVDECNGCLKLGWQNLPLIATSAWR 561 **************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01129 | 4.0E-22 | 33 | 106 | No hit | No description |
Pfam | PF12041 | 1.4E-23 | 33 | 96 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 60.34 | 178 | 541 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-121 | 204 | 561 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 566 aa Download sequence Send to blast |
MKREYLGEEN CSSSWGNCSS DKAKMWGGVE EEDELFGLLG YTVKPSEMAE VAEKIHQIEM 60 AMWNASEDGF SEFAADTIHY NPSDISSWLE SMRSGVSALP EFDSSADSFL KSPKTENGSC 120 RVKISDRMAI DLDFGSDLIA IPGKAIYPVD HSLEISHQPP SKKVKTSPPP PWPPRMSSSV 180 GDSGGALAPP RSLLVDSEEN GIRLVHTLMA CAEAVQQEKL KLAEALVNSI GVLAVSQAGA 240 MRKVALCFQE ALGRRIRKAP TNLPDFSINY KLQNHFYDAC PYLKFAHFTA NQAIFEAFAG 300 KKHVHVIDFS INQGIQWPLL LQALATSPRG APQTFRLTGI GPPEQSDDLQ QVGLNLSHLA 360 KEMNVAFDYR KIVVKSLADL DASMLCIREG ETVAVNSIFD LHQMLARPGA IDKVLHLVRE 420 LRPQIFTVVE QEASHNDDFF YDRFTGALHY YSALFDSLES GGSSISDKDK AMSELYLGQQ 480 ICNVVACEGA DRLERHETLV QWMNRFVSAG FDPVHLGSNV HKQAMMILAY SGGNGYTVDE 540 CNGCLKLGWQ NLPLIATSAW RMPDSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-57 | 198 | 560 | 13 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678460771 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070609.1 | 0.0 | DELLA protein GAI1 | ||||
Swissprot | Q8S4W7 | 0.0 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A2G9HQV2 | 0.0 | A0A2G9HQV2_9LAMI; Uncharacterized protein | ||||
STRING | Migut.E00445.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2126 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 0.0 | GRAS family protein |