PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678460377

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bZIP

Protein Properties

Length: 370aa MW: 41728.4 Da PI: 7.8912

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678460377	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.6	1.5e-09	92	129	7	41
HHCHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLe...ekvkeLeae 41 rr ++NReAAr+sR+RKka++++Le ++ +Le+e 678460377 92 LRRQAQNREAARKSRLRKKAYVQQLEkckQRLIQLEQE 129 69***********************9333345555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.6E-9	85	135	No hit	No description
SMART	SM00338	0.0069	89	146	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-6	92	118	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	93	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.67E-7	93	133	No hit	No description
Pfam	PF14144	7.2E-26	178	252	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MNSGSTQFIP STRFCKQTHQ MATIWDDFKS SGYLDSPPPP PVIIEIDPIS ENQSEDTNSH 60 GKLGSCSKNH HDQQATKPEK VADNPLKFQS VLRRQAQNRE AARKSRLRKK AYVQQLEKCK 120 QRLIQLEQER DQTRTQGPYL DGSLDSIHPS ACPGGMNQGA AAFELEYGRW VEEQRKLMSE 180 LRSAMNSSMG EMELVGYVEK VLNHYYNLFS MKASAVKADA FYILSGLWKT PAERLFSWIG 240 GFRPSEILKV VSPHLGQLSE QQLLDISLLI RSCQQGEDAL TKGMERLHQI IAETIAGEGN 300 YPWQVSASME KLQDLVVFVS EADHLRRETL RQVSCLLSPS QAARGLLALG EYIQRLHALS 360 LAWTTTRHPT

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MNSGSTQFIP STRFCKQTHQ MATIWDDFKS SGYLDSPPPP PVIIEIDPIS ENQSEDTNSH  60
GKLGSCSKNH HDQQATKPEK VADNPLKFQS VLRRQAQNRE AARKSRLRKK AYVQQLEKCK  120
QRLIQLEQER DQTRTQGPYL DGSLDSIHPS ACPGGMNQGA AAFELEYGRW VEEQRKLMSE  180
LRSAMNSSMG EMELVGYVEK VLNHYYNLFS MKASAVKADA FYILSGLWKT PAERLFSWIG  240
GFRPSEILKV VSPHLGQLSE QQLLDISLLI RSCQQGEDAL TKGMERLHQI IAETIAGEGN  300
YPWQVSASME KLQDLVVFVS EADHLRRETL RQVSCLLSPS QAARGLLALG EYIQRLHALS  360
LAWTTTRHPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678460377

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097615.1	1e-132	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X2
Refseq	XP_011097616.1	1e-132	TGACG-sequence-specific DNA-binding protein TGA-1A isoform X3
Swissprot	P14232	1e-118	TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBL	A0A4D8ZE64	1e-134	A0A4D8ZE64_SALSN; Transcription factor TGA
STRING	Migut.H02410.1.p	1e-125	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-114	bZIP family protein

Publications ? help Back to Top
Klinedinst S,Pascuzzi P,Redman J,Desai M,Arias J A xenobiotic-stress-activated transcription factor and its cognate target genes are preferentially expressed in root tip meristems. Plant Mol. Biol., 2000. 42(5): p. 679-88 [PMID:10809441] Johnson C,Boden E,Desai M,Pascuzzi P,Arias J In vivo target promoter-binding activities of a xenobiotic stress-activated TGA factor. Plant J., 2001. 28(2): p. 237-43 [PMID:11722767] Katagiri F,Seipel K,Chua NH Identification of a novel dimer stabilization region in a plant bZIP transcription activator. Mol. Cell. Biol., 1992. 12(11): p. 4809-16 [PMID:1406663] Miao ZH,Lam E Construction of a trans-dominant inhibitor for members of the TGA family of transcription factors conserved in higher plants. Plant J., 1995. 7(6): p. 887-96 [PMID:7599649] Pascuzzi P,Hamilton D,Bodily K,Arias J Auxin-induced stress potentiates trans-activation by a conserved plant basic/leucine-zipper factor. J. Biol. Chem., 1998. 273(41): p. 26631-7 [PMID:9756903]