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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678460014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 22423.2 Da PI: 7.3496 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.2 | 6.1e-05 | 48 | 70 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H 678460014 48 YSCSFCKREFKSAQALGGHMNVH 70 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-6 | 45 | 75 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 46 | 74 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.7E-6 | 48 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.071 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGESGKWLWE NKQPQSMNDL PMGEEDEEEA VFGSGVGGIS YIWPPRSYSC SFCKREFKSA 60 QALGGHMNVH RGDRAKMKQS LVASPPNFET RPWVSSPSSK GMRVSSPRPN NFIMIDEGSL 120 PSPQENEKKK SMAVEFDFRS GKKRDGSMSF RSVVYGDFEE EMLGCRKRKT EEKTLNFFSK 180 ARTFDDLDLE LRLGDAPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 43 | 70 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 43 | 70 | 2 | 29 | Transcriptional regulator SUPERMAN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678460014 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011094902.1 | 1e-29 | zinc finger protein 10 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 8e-22 | C2H2 family protein |