PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459558
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 305aa    MW: 34083.6 Da    PI: 4.9665
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459558genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21.1e-09229272447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      W  eE+ +++++  + G g W +I+r+   +Rt+ q+ s+ qk+
        678459558 229 WCDEEHRRFLRGLDECGRGKWQRISREYVITRTPQQVASHAQKF 272
                      889**************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.223218277IPR017930Myb domain
SuperFamilySSF466895.06E-13224276IPR009057Homeodomain-like
SMARTSM007176.4E-6225275IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-14226276IPR006447Myb domain, plants
CDDcd001672.85E-6228273No hitNo description
Gene3DG3DSA:1.10.10.602.6E-7228268IPR009057Homeodomain-like
PfamPF002491.3E-7229271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MESDGLLEEE EEKQESNDLQ DMQSCFQRAL LGLENSYDAH GGGWVSEPVK SLDLQTSRSW  60
MEMDDDDSEQ HLPSIHQMSN SVEDTVLPVL PPMMTSCAVQ DTGAAWGIGG MAAELLPNSV  120
FPPSANHMGY WNAHHHNVDG ITGFYRDGAP TSTLTNQNGG WVGGSGGQPP TVISLDSLTP  180
VSQSTYGVSS NIESYSWEEV SKFLGIDVEQ EVSSGERQKR RRRGKGITWC DEEHRRFLRG  240
LDECGRGKWQ RISREYVITR TPQQVASHAQ KFFQRQAVQQ KNRNSKFYKP LRLPGEWNST  300
TSSSP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459558
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-17MYB family protein