PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

678459442

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 205aa MW: 22692.3 Da PI: 6.8632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678459442	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.0003	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cg+ F++ L H +H 678459442 68 YTCKTCGRAFPSFQALGGHRTSH 90 9**********999998888777 PP
2	zf-C2H2	11.7	0.00077	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+ Fs+ L H+r+H 678459442 132 HECSFCDAEFSSGQALGGHMRKH 154 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.72E-6	65	94	No hit	No description
Pfam	PF13912	2.0E-10	67	92	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.448	68	95	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.081	68	90	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	70	90	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.1E-4	130	156	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.81E-6	130	158	No hit	No description
PROSITE profile	PS50157	10.055	132	159	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.3E-11	132	156	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.015	132	154	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	134	154	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MDQIAILPRD DGDDDDGDHS STIIANGKRC SPVSALEETE IENTTSTEVD TAQSLILLSQ 60 GPKCEDTYTC KTCGRAFPSF QALGGHRTSH NKSKNDRRMF RAVDEENYSP GPSILSLQLS 120 NFSSRPKFSR IHECSFCDAE FSSGQALGGH MRKHRGNNII IRPDPRAIDH QQQPVLEANK 180 RKIVLSLDLN LPAVGDESKK TRKLP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678459442

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834577.1	8e-37	PREDICTED: zinc finger protein ZAT5
TrEMBL	S8E5A7	3e-32	S8E5A7_9LAMI; Uncharacterized protein
STRING	Migut.F01919.1.p	3e-36	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4015	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	2e-29	C2H2 family protein