PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678459405
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 913aa    MW: 100641 Da    PI: 6.6277
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678459405genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.6e-24135236199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  678459405 135 FCKTLTASDTSTHGGFSVPRRAAEKVfpaldysQTPPA--QELIAKDLHGSEWKFRHIFRGQPKRHLLTTGWSVFVSAKKLAAGDSVIFI--WDEDNQLL 230
                99****************************97544444..48************************************************..7888889* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678459405 231 LGIRRA 236
                ***997 PP
2Auxin_resp114.69.2e-38261344183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++t+s F+++YnPras+seFv++++++ ka++ ++vsvGmRf+m fete+ss rr++Gt+ g+sd+dpv+WpnS Wrs+k
   678459405 261 AAHAVATNSRFNIFYNPRASPSEFVIPLARYAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTILGISDFDPVHWPNSFWRSVK 344
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-45121264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-42127249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-21134235No hitNo description
PROSITE profilePS5086313.253135237IPR003340B3 DNA binding domain
PfamPF023628.0E-23135236IPR003340B3 DNA binding domain
SMARTSM010192.4E-24135237IPR003340B3 DNA binding domain
PfamPF065071.3E-32261344IPR010525Auxin response factor
SuperFamilySSF542772.35E-7750828No hitNo description
PROSITE profilePS5174525.992754838IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 913 aa     Download sequence    Send to blast
MAAEEKCLNS ELWHACAGPL VSLPPIGSRV VYFPQGHSEQ FTLKIYSRGY SSEVDKSYQV  60
AASTNKDSYA SVPSYPGLQP QLICQLHNVT MHADVETDEV YAQMTLQPLT PQEQKDICLL  120
PAELGNASKQ PTNYFCKTLT ASDTSTHGGF SVPRRAAEKV FPALDYSQTP PAQELIAKDL  180
HGSEWKFRHI FRGQPKRHLL TTGWSVFVSA KKLAAGDSVI FIWDEDNQLL LGIRRATRPQ  240
TVMSSSVLSN DNMHIGLLAA AAHAVATNSR FNIFYNPRAS PSEFVIPLAR YAKAVYHTRV  300
SVGMRFRMLF ETEESSVRRY MGTILGISDF DPVHWPNSFW RSVKVGWDES TAGEKQQRVS  360
LWEIEPLTTF PMYPSPFSMR LKRPWPSGLP LFPAFKDGDM SLSSPTTWLQ GGARDQYLQS  420
MNFQGFGASP FIQAQPLCGS QNDIYQVMAA AAFQQAGSMD PSKLASQPFL QLHGIGNQIP  480
ASMLQSRVLQ QSQTQPGLSH DVPENNSVAQ AQFLPQLQGS QPLMNLPQQQ QCFQQSESLH  540
PLPPYQQAVK AIPGFPDAGS DSQSPISHLM ISSGVKRQSS ANINENNVPA NNSSSMQRLL  600
SSFSSEGALC HVDSHGNPLI SPSPLPKPSA LDPEPPSKAS GYGFPNPEQL FTQSTSDLTA  660
LFPPLPPREL QEFRGVTHSD ANFSFGVNTD LPSNILNGVS TTRNGGGESL SLPYSSPAFA  720
SVPLNLDVTA SSCVDESGFF HSKENLDHDN TTPSAFVKVH KSGTFGRSLD ISKFSNYSEL  780
RSELARMFGL EGLLEDPQRS GWQLVFVDRE NDVLLLGDDP WQEFVNNVWC IKILSPVEVQ  840
QMGKQGLNLP TSVKSQLVLQ QYHVYQQKHH DAVGTPPSSI TGPPLLLYEA HYPPDALHTL  900
KEPIIVSTKR HKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-147836551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678459405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249244.10.0PREDICTED: auxin response factor 6-like isoform X1
RefseqXP_019249245.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2G9HIV10.0A0A2G9HIV1_9LAMI; Auxin response factor
STRINGXP_009757615.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]