![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 678459075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 99aa MW: 11636.2 Da PI: 9.2956 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.1 | 2.4e-06 | 21 | 62 | 15 | 52 |
HHHHHHHHHHCTSCC.C......TTS-STCHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.as...kapskKlsKaeiLekAveYIk 52 ++ + +++L+e+lP+ + +s+K+s + +L+++++YI 678459075 21 QVTDLLARLQEILPEiHRrhrRRRSEKVSASRVLQETCNYIT 62 78899**********777***********************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.912 | 6 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-4 | 13 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.84E-7 | 19 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 99 aa Download sequence Send to blast |
MSERRTRSRE PTAVSRVNEQ QVTDLLARLQ EILPEIHRRH RRRRSEKVSA SRVLQETCNY 60 ITILHREVGD LSDRLSYLLA THDVESDEAA VIRSLLMRD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 678459075 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014507668.1 | 1e-32 | transcription factor PRE6 | ||||
Refseq | XP_017429660.1 | 1e-32 | PREDICTED: transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 6e-31 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | M5XQD9 | 1e-31 | M5XQD9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ28114 | 2e-32 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28857.1 | 3e-29 | bHLH family protein |