PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678458436

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 454aa MW: 48643.2 Da PI: 4.8228

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678458436	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.3e-39	117	177	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rn+PvG+grrk k+s+ 678458436 117 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGAMRNLPVGAGRRKTKSSN 177 7899*****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	114	174	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	119	175	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.584	121	175	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	123	159	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MEPEIKLFGS KIMFPVTAEA SEGSGCGCCD SSSVESRGGE DGDKILQAEE EGQVAETSET 60 DELEGNECCI TSADEPQNPG SIGSSDENPN WEGETMPAND MSDNDGNNRQ QKPLKKPDKI 120 LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS CQRYWTAGGA MRNLPVGAGR RKTKSSNSNC 180 RHVTISEALG AGITDDSNNL HLPAVQPGST VLSFGPDSSL CESTASGLKL ADKRAQNGPG 240 SGVYNIGTAA SPVPCMNQDS NGGDGSSKST PQVPVPQNLN CFPPPVPCIP GVAWTYPMNT 300 AVPIPAIYPM PFFPPPYWNC AVSNPWVVPW LPVMSPPPDH NATNFAPASP LGKHSRNGEL 360 LKGKKPESED PTEPQKSENS IVVPKTLRVD DPEEAAKSSI WETLGIKYDS LSRKGLFKAL 420 QPKDQGGNAL HPTSQALQAN PAALSRSMTF QETA

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MEPEIKLFGS KIMFPVTAEA SEGSGCGCCD SSSVESRGGE DGDKILQAEE EGQVAETSET  60
DELEGNECCI TSADEPQNPG SIGSSDENPN WEGETMPAND MSDNDGNNRQ QKPLKKPDKI  120
LPCPRCNSMD TKFCYYNNYN VNQPRHFCKS CQRYWTAGGA MRNLPVGAGR RKTKSSNSNC  180
RHVTISEALG AGITDDSNNL HLPAVQPGST VLSFGPDSSL CESTASGLKL ADKRAQNGPG  240
SGVYNIGTAA SPVPCMNQDS NGGDGSSKST PQVPVPQNLN CFPPPVPCIP GVAWTYPMNT  300
AVPIPAIYPM PFFPPPYWNC AVSNPWVVPW LPVMSPPPDH NATNFAPASP LGKHSRNGEL  360
LKGKKPESED PTEPQKSENS IVVPKTLRVD DPEEAAKSSI WETLGIKYDS LSRKGLFKAL  420
QPKDQGGNAL HPTSQALQAN PAALSRSMTF QETA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678458436

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087240.1	1e-167	cyclic dof factor 1
TrEMBL	A0A2G9HCF7	1e-152	A0A2G9HCF7_9LAMI; Uncharacterized protein
STRING	XP_009587736.1	1e-149	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-72	cycling DOF factor 2